View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14334_low_10 (Length: 523)

Name: NF14334_low_10
Description: NF14334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14334_low_10
NF14334_low_10
[»] chr5 (2 HSPs)
chr5 (108-517)||(6960884-6961310)
chr5 (290-335)||(12242758-12242803)
[»] chr2 (4 HSPs)
chr2 (292-335)||(27288590-27288633)
chr2 (293-337)||(41674293-41674339)
chr2 (292-325)||(22878054-22878087)
chr2 (292-329)||(39929824-39929861)
[»] chr3 (2 HSPs)
chr3 (292-328)||(48397603-48397639)
chr3 (292-365)||(16790396-16790469)
[»] chr8 (5 HSPs)
chr8 (292-335)||(20672729-20672772)
chr8 (300-346)||(33553227-33553273)
chr8 (297-335)||(43907869-43907907)
chr8 (292-329)||(26479736-26479773)
chr8 (298-346)||(40280264-40280312)
[»] chr1 (5 HSPs)
chr1 (292-335)||(14737775-14737818)
chr1 (350-387)||(47091640-47091677)
chr1 (292-328)||(46499931-46499967)
chr1 (293-329)||(47002950-47002986)
chr1 (293-325)||(47877080-47877112)
[»] chr4 (2 HSPs)
chr4 (292-329)||(50745957-50745994)
chr4 (292-335)||(2838234-2838278)
[»] chr7 (1 HSPs)
chr7 (300-332)||(20882004-20882036)
[»] chr6 (1 HSPs)
chr6 (292-372)||(31583658-31583738)


Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 108 - 517
Target Start/End: Original strand, 6960884 - 6961310
Alignment:
Q  108 tagtttttgtttaatcttaatgccaccaaccactggtaatctttccacat---------agcttgaaaagtcttctagcttatttggcttcaaacactcc 198  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||         ||||||||||||||||||||||||||||||||||||||| |    
T  6960884 tagtttttgtttagtcttaatgccaccaaccaatggtaatctttccacatggtaactctagcttgaaaagtcttctagcttatttggcttcaaacactac 6960983  T
Q  199 atacacacttgttttcaaaaaacatttaaatttatgatcaaagagtttaaacaaagcgttgtattacaagtgtctatgatataaatgtttatgtataata 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6960984 atacacacttgttttcaaaaaacatttaaatttatgatcaaagagtttaaagaaagcgttgtattacaagtgtctatgatataaatgtttatgtataata 6961083  T
Q  299 aaagataaaataaaatcaaattgtttttataagctatttcgaagagctaataaaaataaattgaaaataacttacaaacattttataaactgtatccata 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  6961084 aaagataaaataaaatcaaattgtttttataagctatttcgaagagctgataaaaaaaaattgaaaataacttaaaaacattttataaactgtatccata 6961183  T
Q  399 aatttac---------acaaataagtcaatccactcaaaaatctttatctaaatttataaattggtcataaatctttgatatatgataccaaatattcat 489  Q
    ||||| |         |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6961184 aattttcacaaatattacaaataagtcaatccactc-aaaatctttatctaaatttatcaattggtcataaatctttgatatatgataccaaatattcat 6961282  T
Q  490 ttgagaagcttccaacgtggcaacaaac 517  Q
    ||||||||||||||||||||||||||||    
T  6961283 ttgagaagcttccaacgtggcaacaaac 6961310  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 12242803 - 12242758
Alignment:
Q  290 tgtataataaaagataaaataaaatcaaattgtttttataagctat 335  Q
    ||||||| ||||||||||||| | |||||||||||| |||||||||    
T  12242803 tgtataacaaaagataaaatagagtcaaattgttttcataagctat 12242758  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 292 - 335
Target Start/End: Original strand, 27288590 - 27288633
Alignment:
Q  292 tataataaaagataaaataaaatcaaattgtttttataagctat 335  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||    
T  27288590 tataataaaagataaaataaaatcaaactgtttatataagctat 27288633  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 337
Target Start/End: Complemental strand, 41674339 - 41674293
Alignment:
Q  293 ataataaaagataaaataaaatcaaattgtttt--tataagctattt 337  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||||    
T  41674339 ataataaaagataaaataaaatcagattgtttttgtataagctattt 41674293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 325
Target Start/End: Original strand, 22878054 - 22878087
Alignment:
Q  292 tataataaaagataaaataaaatcaaattgtttt 325  Q
    ||||||||||||| ||||||||||||||||||||    
T  22878054 tataataaaagatgaaataaaatcaaattgtttt 22878087  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 39929824 - 39929861
Alignment:
Q  292 tataataaaagataaaataaaatcaaattgtttttata 329  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  39929824 tataacaaaagataaaatcaaatcaaattgtttttata 39929861  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 328
Target Start/End: Original strand, 48397603 - 48397639
Alignment:
Q  292 tataataaaagataaaataaaatcaaattgtttttat 328  Q
    ||||||||||||||||||||| |||||||||||||||    
T  48397603 tataataaaagataaaataaagtcaaattgtttttat 48397639  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 365
Target Start/End: Complemental strand, 16790469 - 16790396
Alignment:
Q  292 tataataaaagataaaataaaatcaaattgtttttataagctatttcgaagagctaataaaaataaattgaaaa 365  Q
    ||||| || |||||||||||||||||||| |||| ||||||||| | | | |||| || |||||||| ||||||    
T  16790469 tataacaacagataaaataaaatcaaattattttcataagctatcttggatagcttatgaaaataaactgaaaa 16790396  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 335
Target Start/End: Original strand, 20672729 - 20672772
Alignment:
Q  292 tataataaaagataaaataaaatcaaattgtttttataagctat 335  Q
    ||||| ||||||||||||||| ||||| ||||||||||||||||    
T  20672729 tataacaaaagataaaataaagtcaaactgtttttataagctat 20672772  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 346
Target Start/End: Original strand, 33553227 - 33553273
Alignment:
Q  300 aagataaaataaaatcaaattgtttttataagctatttcgaagagct 346  Q
    ||||||||||||| |||||||||||| ||||||||| | ||||||||    
T  33553227 aagataaaataaagtcaaattgttttcataagctatcttgaagagct 33553273  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 335
Target Start/End: Complemental strand, 43907907 - 43907869
Alignment:
Q  297 taaaagataaaataaaatcaaattgtttttataagctat 335  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  43907907 taaaagataaaataaagtcaaattgttttcataagctat 43907869  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 26479736 - 26479773
Alignment:
Q  292 tataataaaagataaaataaaatcaaattgtttttata 329  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  26479736 tataatcaaagataaaataaaatcaaactgtttttata 26479773  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 346
Target Start/End: Complemental strand, 40280312 - 40280264
Alignment:
Q  298 aaaagataaaataaaatcaaattgtttttataagctatttcgaagagct 346  Q
    ||||||||||||||| | |||||||||| ||||||||| | ||||||||    
T  40280312 aaaagataaaataaagtaaaattgttttcataagctatctagaagagct 40280264  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 335
Target Start/End: Complemental strand, 14737818 - 14737775
Alignment:
Q  292 tataataaaagataaaataaaatcaaattgtttttataagctat 335  Q
    ||||| ||||||||||||||| |||||||||||| |||||||||    
T  14737818 tataacaaaagataaaataaagtcaaattgttttcataagctat 14737775  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Complemental strand, 47091677 - 47091640
Alignment:
Q  350 aaaaataaattgaaaataacttacaaacattttataaa 387  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  47091677 aaaaataaattgaaaacaacttataaacattttataaa 47091640  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 328
Target Start/End: Complemental strand, 46499967 - 46499931
Alignment:
Q  292 tataataaaagataaaataaaatcaaattgtttttat 328  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  46499967 tataagaaaagataaaataaagtcaaattgtttttat 46499931  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 329
Target Start/End: Complemental strand, 47002986 - 47002950
Alignment:
Q  293 ataataaaagataaaataaaatcaaattgtttttata 329  Q
    |||||||||||||||||||| | ||||||||||||||    
T  47002986 ataataaaagataaaataaagttaaattgtttttata 47002950  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 47877080 - 47877112
Alignment:
Q  293 ataataaaagataaaataaaatcaaattgtttt 325  Q
    |||| ||||||||||||||||||||||||||||    
T  47877080 ataacaaaagataaaataaaatcaaattgtttt 47877112  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 50745957 - 50745994
Alignment:
Q  292 tataataaaagataaaataaaatcaaattgtttttata 329  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  50745957 tataacaaaagataaaataaaatcaaactgtttttata 50745994  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 335
Target Start/End: Original strand, 2838234 - 2838278
Alignment:
Q  292 tataataaaagataaaataaaatcaaattgtttt-tataagctat 335  Q
    |||||||||| |||||||||| |||||||||||| ||||||||||    
T  2838234 tataataaaatataaaataaagtcaaattgttttctataagctat 2838278  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 332
Target Start/End: Original strand, 20882004 - 20882036
Alignment:
Q  300 aagataaaataaaatcaaattgtttttataagc 332  Q
    ||||||||||||| |||||||||||||||||||    
T  20882004 aagataaaataaattcaaattgtttttataagc 20882036  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 372
Target Start/End: Original strand, 31583658 - 31583738
Alignment:
Q  292 tataataaaagataaaataaaatcaaattgtttttataagctatttcgaagagctaataaaaataaattgaaaataactta 372  Q
    ||||| || ||||||||| || |||||||||||| |||||||||  |||| |||| ||  |||||| ||||||| ||||||    
T  31583658 tataacaagagataaaatgaagtcaaattgttttcataagctatcccgaaaagcttatggaaataagttgaaaacaactta 31583738  T

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