View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14334_low_11 (Length: 475)
Name: NF14334_low_11
Description: NF14334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14334_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 6 - 459
Target Start/End: Complemental strand, 47916414 - 47915962
Alignment:
| Q |
6 |
aagcaaaggccacaaagcaaattgatgacaaaagaatatgatgtaagaattccatttgttggcatatggagaatgaacatgttcaggttgacatggagga |
105 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47916414 |
aagcaatggccacaaagcaaattgatgacaaaagaatatgatgtaagaattccatttgttggcatatggagaatgaacatgttcaggttgacatggagga |
47916315 |
T |
|
| Q |
106 |
caatttatgtgataatcacaacattgattgctatgatattaccattcttcaacaacgttgtgggtttgctaggagccatatcgttctttcccttgacagt |
205 |
Q |
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| T |
47916314 |
caatttatgtgataatcacaacattgattgctatgatattaccattcttcaacaacgttgtgggtttgctaggagccatatcgttctttcccttgacagt |
47916215 |
T |
|
| Q |
206 |
ttactttccaacagagatgtacttgacacaagcccaagtgcccaagtattctactatatggattgggatgaaattgctaagtggtttttgtttgattgtc |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47916214 |
gtactttccaacagagatgtacttgacacaagcccaagtgcccaagtattctactatatggattgggatgaaattgctaagtggtttttgtttgattgtc |
47916115 |
T |
|
| Q |
306 |
actcttgttgctgcagttggatcaattgaaggaattgtgtcggatcttaagacctaccatcccttcaacccaaattaacccgggcttcttctatcgttcg |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47916114 |
actcttgttgctgcagttggatcaattgaaggaattgtgtcagatcttaagacctaccatcccttcaacccaaattaacccaggcttcttctatcgttcg |
47916015 |
T |
|
| Q |
406 |
ataatgataaataaataagttgttagaaacaatctttcaaaaaagagttgttag |
459 |
Q |
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| T |
47916014 |
ataatgataaataaataagctgttagaaacaacctttc-aaaaagagttgttag |
47915962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 343
Target Start/End: Complemental strand, 47901713 - 47901383
Alignment:
| Q |
13 |
ggccacaaagcaaattgatgacaaaagaatatgatgtaagaattccatttgttggcatatggagaatgaacatgttcaggttgacatggaggacaattta |
112 |
Q |
| |
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|||||||||||||| || ||||| |||||||| |||||| ||||||||| ||||||| |||||||||||||||||||||| ||| |||||||||| | || |
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| T |
47901713 |
ggccacaaagcaaactggtgacacaagaatattatgtaaaaattccattggttggcacatggagaatgaacatgttcagggtgatatggaggacattata |
47901614 |
T |
|
| Q |
113 |
tgtgataatcacaacattgattgctatgatattaccattcttcaacaacgttgtgggtttgctaggagccatatcgttctttcccttgacagtttacttt |
212 |
Q |
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| T |
47901613 |
tgtgatattcacaacagtgattgctatgatatttccattcttcaacagcgttgtgggtttgttaggagctatttcattctttcctttgacagtgtacttt |
47901514 |
T |
|
| Q |
213 |
ccaacagagatgtacttgacacaagcccaagtgcccaagtattctactatatggattgggatgaaattgctaagtggtttttgtttgattgtcactcttg |
312 |
Q |
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|||| |||||||||||||||||||||| |||||||||| |||||| ||||||||||||| ||||||||||||||| | |||||||||||||||||||||| |
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| T |
47901513 |
ccaatagagatgtacttgacacaagccaaagtgcccaaatattcttctatatggattggaatgaaattgctaagttggttttgtttgattgtcactcttg |
47901414 |
T |
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| Q |
313 |
ttgctgcagttggatcaattgaaggaattgt |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
47901413 |
ttgctgcagttggatcaattgaaggaattgt |
47901383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 13 - 340
Target Start/End: Complemental strand, 47922839 - 47922512
Alignment:
| Q |
13 |
ggccacaaagcaaattgatgacaaaagaatatgatgtaagaattccatttgttggcatatggagaatgaacatgttcaggttgacatggaggacaattta |
112 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||| |||||||||| | || |
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| T |
47922839 |
ggccacaaagcaaattgataacacaagaatatgatgtaagaattccattggttggcacatggagaatgaacatgttcagggtgatatggaggacattata |
47922740 |
T |
|
| Q |
113 |
tgtgataatcacaacattgattgctatgatattaccattcttcaacaacgttgtgggtttgctaggagccatatcgttctttcccttgacagtttacttt |
212 |
Q |
| |
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||||||||| ||||||||||||||||||||||| ||||| ||||||||| |||| |||||| |||||||||| ||||||||||||||||| || |||||| |
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| T |
47922739 |
tgtgataattacaacattgattgctatgatatttccatttttcaacaacattgttggtttgttaggagccatgtcgttctttcccttgaccgtgtacttt |
47922640 |
T |
|
| Q |
213 |
ccaacagagatgtacttgacacaagcccaagtgcccaagtattctactatatggattgggatgaaattgctaagtggtttttgtttgattgtcactcttg |
312 |
Q |
| |
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|||| |||||||||| ||| |||||| ||| |||||||||||| ||||||||| |||||||| |||||||||| |||||||||||||||||||||| |
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| T |
47922639 |
ccaatagagatgtacctgaaacaagctagagtacccaagtattcttgtatatggataaggatgaaactgctaagtggattttgtttgattgtcactcttg |
47922540 |
T |
|
| Q |
313 |
ttgctgcagttggatcaattgaaggaat |
340 |
Q |
| |
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||| || |||| |||||| ||||||| |
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| T |
47922539 |
ttggtgttgttgcatcaatccaaggaat |
47922512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 13 - 340
Target Start/End: Complemental strand, 47907957 - 47907630
Alignment:
| Q |
13 |
ggccacaaagcaaattgatgacaaaagaatatgatgtaagaattccatttgttggcatatggagaatgaacatgttcaggttgacatggaggacaattta |
112 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||| |||||||| |||||||||||||||||||| ||||| ||||| | ||||||||||| || |
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|
| T |
47907957 |
ggccacaaagcaaatttatgacaaaagaatatcatgtaaacattccattagttggcatatggagaatgaatatgtttaggttaatttggaggacaatgta |
47907858 |
T |
|
| Q |
113 |
tgtgataatcacaacattgattgctatgatattaccattcttcaacaacgttgtgggtttgctaggagccatatcgttctttcccttgacagtttacttt |
212 |
Q |
| |
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||||||| |||| ||| |||||||||| ||||||||||||||||| | | ||||||| ||||||||||||||||| || ||||| |||||||| |||||| |
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|
| T |
47907857 |
tgtgatattcacgacagtgattgctatcatattaccattcttcaatagcattgtgggattgctaggagccatatccttttttccattgacagtgtacttt |
47907758 |
T |
|
| Q |
213 |
ccaacagagatgtacttgacacaagcccaagtgcccaagtattctactatatggattgggatgaaattgctaagtggtttttgtttgattgtcactcttg |
312 |
Q |
| |
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|||||||| ||||| ||| |||||| | || ||||| |||||| ||||||||||||| |||||| | |||||||| ||||| |||||||||||||||| |
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| T |
47907757 |
ccaacagaaatgtatctgaaacaagctaaggttcccaaatattcttctatatggattggaatgaaacttctaagtgggttttgcttgattgtcactcttg |
47907658 |
T |
|
| Q |
313 |
ttgctgcagttggatcaattgaaggaat |
340 |
Q |
| |
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||||||||||||||||||||| |||||| |
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|
| T |
47907657 |
ttgctgcagttggatcaattgtaggaat |
47907630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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