View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14334_low_12 (Length: 441)
Name: NF14334_low_12
Description: NF14334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14334_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 2e-78; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 601099 - 600870
Alignment:
| Q |
19 |
cccgcatcctcttagataaatacaatatatatatgcgggttcaaagttggtacttaagtatctatacaaaaataaatttgaatttatgattgaattcctt |
118 |
Q |
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| T |
601099 |
cccgcatccccttagataaatacagtatatgtatgcgggttcagggttggtacttaagtctatatacaaaaataaatttgaatttatgattgaattcatt |
601000 |
T |
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| Q |
119 |
aatgaaagttcgaagtacaatatcatacgatatatagatacaatacaaagttgagagaatatctcgagtttgttacaacaaacatcttagattagattta |
218 |
Q |
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| T |
600999 |
aatgaaagttcggagtacaatatcatatgatatatagatacaatagaaggttgaga--------agagttcgttacaacaaacatcttagattagattta |
600908 |
T |
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| Q |
219 |
caatttgaatttcgaagtagactgcaacaaccaactta |
256 |
Q |
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| T |
600907 |
caatttgaatttcgaagtagactgcaacaaccagctta |
600870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 157 - 256
Target Start/End: Original strand, 334508 - 334609
Alignment:
| Q |
157 |
tacaatacaaag-ttgagagaatatctcgagtttgttacaacaaacatcttagatta-gatttacaatttgaatttcgaagtagactgcaacaaccaact |
254 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||| | ||||| ||| || |
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| T |
334508 |
tacaatacaaaggttgagagaatatctagagtttgttacaacaaacatcttagattaggatttacaatttgaatttagaaatagaatacaacatccagct |
334607 |
T |
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| Q |
255 |
ta |
256 |
Q |
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|| |
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| T |
334608 |
ta |
334609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 140
Target Start/End: Original strand, 334403 - 334514
Alignment:
| Q |
29 |
cttagataaatacaatatatatatgcgggttcaaagttggtacttaagtatctatacaaaaataaatttgaatttatgattgaattccttaatgaaagtt |
128 |
Q |
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|||||||||||||| ||||||||||||||||| | |||| |||||||||||| || ||||||| |||||||| ||||| ||||| |||||||||||| |
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| T |
334403 |
cttagataaatacagtatatatatgcgggttcggggcaggtagttaagtatctatgcagaaataaaattgaatttttgattcaattcattaatgaaagtt |
334502 |
T |
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| Q |
129 |
cgaagtacaata |
140 |
Q |
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| T |
334503 |
catagtacaata |
334514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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