View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14334_low_13 (Length: 440)
Name: NF14334_low_13
Description: NF14334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14334_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Complemental strand, 12038752 - 12038349
Alignment:
| Q |
19 |
tattctatataagtagttgttgtttgtcacaacaccaccgtattggttttcgttttcttcttccacttgatgaaaaaccaaaggaacaaagtcgttgaaa |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12038752 |
tattctatataagtagttgttgtttgtcacaacaccaccgtattggttttcgttttcttcttccacttgatgaaaaaccaaaggaacaaagtcgttgaaa |
12038653 |
T |
|
| Q |
119 |
caagctcgaccaaattgttgttctggattgttgtttgatgaaattgttagaaatccttcagcagtccaaagttgaattaatctctcggcatcaattaaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
12038652 |
caagctcgaccaaattgttgttctggattgttgtttgaggaaattgttagaaatccttcagccgtccaaagttgaattaatctctcggcatcaattaaat |
12038553 |
T |
|
| Q |
219 |
aatcttctggaaacaatgaacaatatgcaaagcacaacttctgatacgtgggaagatcttcgtaatagatatacctgaaactttgtagaaacatcttctc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12038552 |
aatcttctggaaacaatgaacaatatgcaaagcacaacttctgatacgtgggaagatcttcgtaatagatatacctgaaactttgtagaaacatcttctc |
12038453 |
T |
|
| Q |
319 |
tatgtgaggttctggttgcagaatcgagccctcgtgattatagagcatcgatgtcgctacgatcactattgcaagagggactccacgacaatccctcacg |
418 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12038452 |
tatgtgaggttctggttgcagaatcgagccctcgcgattatagagcatcgctgtcgctacgatcactattgcaagagggactccacgacaatccctcacg |
12038353 |
T |
|
| Q |
419 |
atct |
422 |
Q |
| |
|
|||| |
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|
| T |
12038352 |
atct |
12038349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 72 - 289
Target Start/End: Complemental strand, 11827790 - 11827588
Alignment:
| Q |
72 |
tttcttcttccacttgatgaaaaaccaaaggaacaaagtcgttgaaacaagctcgaccaaattgttgttctggattgttgtttgatgaaattgttagaaa |
171 |
Q |
| |
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||||||||||| ||||||| |||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| | ||||| |
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| T |
11827790 |
tttcttcttccgcttgatggaaaaccaaaggaacaaagtcttcgaaacaagcatgaccaaattgttgttctggattgata---------------agaaa |
11827706 |
T |
|
| Q |
172 |
tccttcagcagtccaaagttgaattaatctctcggcatcaattaaataatcttctggaaacaatgaacaatatgcaaagcacaacttctgatacgtggga |
271 |
Q |
| |
|
|||||| ||||||| |||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| |||||| |
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| T |
11827705 |
cccttcaccagtccagagttgaatcaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataatttctgataagtggga |
11827606 |
T |
|
| Q |
272 |
agatcttcgtaatagata |
289 |
Q |
| |
|
||||| |||||||||||| |
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|
| T |
11827605 |
agatcgtcgtaatagata |
11827588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 72 - 289
Target Start/End: Complemental strand, 11859925 - 11859723
Alignment:
| Q |
72 |
tttcttcttccacttgatgaaaaaccaaaggaacaaagtcgttgaaacaagctcgaccaaattgttgttctggattgttgtttgatgaaattgttagaaa |
171 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| | ||||| |
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|
| T |
11859925 |
tttcttcttccgcttgatggaaaaccaaaggaacaaagtctttgaaacaagcttgaccaaattgttgttctggattgata---------------agaaa |
11859841 |
T |
|
| Q |
172 |
tccttcagcagtccaaagttgaattaatctctcggcatcaattaaataatcttctggaaacaatgaacaatatgcaaagcacaacttctgatacgtggga |
271 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |
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|
| T |
11859840 |
cccttcagccgtccagagttgaatcaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcgaagcataacttctgataagtggga |
11859741 |
T |
|
| Q |
272 |
agatcttcgtaatagata |
289 |
Q |
| |
|
|| | |||||||||||| |
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|
| T |
11859740 |
aggttgtcgtaatagata |
11859723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 169 - 285
Target Start/End: Complemental strand, 11731512 - 11731396
Alignment:
| Q |
169 |
aaatccttcagcagtccaaagttgaattaatctctcggcatcaattaaataatcttctggaaacaatgaacaatatgcaaagcacaacttctgatacgtg |
268 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||| || ||||||||||||||||||| ||||||||||||| || | | | ||| |
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|
| T |
11731512 |
aaatccttcagcaaaccaaagttgaattaatctctcggcatcaatcaaatgatgttctggaaacaatgaacaaaatgcaaagcacaatttataacatgtg |
11731413 |
T |
|
| Q |
269 |
ggaagatcttcgtaata |
285 |
Q |
| |
|
|||||||| |||||||| |
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|
| T |
11731412 |
ggaagatcctcgtaata |
11731396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 76 - 258
Target Start/End: Original strand, 11902603 - 11902770
Alignment:
| Q |
76 |
ttcttccacttgatgaaaaaccaaaggaacaaagtcgttgaaacaagctcgaccaaattgttgttctggattgttgtttgatgaaattgttagaaatcct |
175 |
Q |
| |
|
|||||||||||| || |||||||| ||||||||||| |||||||||| ||||| ||||||||||| |||| || || ||||||||| |
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|
| T |
11902603 |
ttcttccacttgttggaaaaccaacggaacaaagtcattgaaacaaggtcgacaaaattgttgttgtggaatggtg---------------agaaatcct |
11902687 |
T |
|
| Q |
176 |
tcagcagtccaaagttgaattaatctctcggcatcaattaaataatcttctggaaacaatgaacaatatgcaaagcacaactt |
258 |
Q |
| |
|
||||||||||| |||| |||||||||||| |||||||| ||||||||| |||||||||||||||||||||||| || ||||| |
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|
| T |
11902688 |
tcagcagtccagagttcaattaatctctcagcatcaatcaaataatctcttggaaacaatgaacaatatgcaaaacataactt |
11902770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 168 - 262
Target Start/End: Original strand, 11974974 - 11975068
Alignment:
| Q |
168 |
gaaatccttcagcagtccaaagttgaattaatctctcggcatcaattaaataatcttctggaaacaatgaacaatatgcaaagcacaacttctga |
262 |
Q |
| |
|
|||||||||| || ||| | || ||||||||||||||| ||||||| |||| ||||| ||||||||||||||| || |||| || ||||||||| |
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| T |
11974974 |
gaaatccttctgctgtcaagagatgaattaatctctcgacatcaatcaaatgatcttgaggaaacaatgaacaaaattcaaaacaaaacttctga |
11975068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 7495167 - 7495122
Alignment:
| Q |
208 |
atcaattaaataatcttctggaaacaatgaacaatatgcaaagcac |
253 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| | ||||||||| |
|
|
| T |
7495167 |
atcaattaaatagtcttttggaaacaatgaacaaaaagcaaagcac |
7495122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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