View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14334_low_16 (Length: 374)
Name: NF14334_low_16
Description: NF14334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14334_low_16 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr6 (4 HSPs) |
| |
|
| [»] chr8 (4 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 14 - 374
Target Start/End: Complemental strand, 33653174 - 33652814
Alignment:
| Q |
14 |
tgaaagacattggagtgttgaccaaggcatcaccggagaaacatttaagacatttgacttcagaaagagaaatcatgcatgaaaatattggccaacttcg |
113 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33653174 |
tgaaagacattggagtattgaccaaggcatcaccggagaaacatttaagacatttgacttcagaaagagaaatcatgcatgaaaatattggccaacttcg |
33653075 |
T |
|
| Q |
114 |
cacagactcgtctttgtcaaatcatgatcatgcaatgagaggaagtcagtctagaaatgaagaagtatcatacaagttaccttcacttcatggcgataat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33653074 |
cacagactcgtctttgtcaaatcatgatcatgcaatgagaggaagtcagtctagaaatgaagaagtatcatacaagttaccttcacttcatggtgataat |
33652975 |
T |
|
| Q |
214 |
aaccaacctcgacataatactgacatgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctgtgaattcaaaggtgaatcagg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33652974 |
aaccaacctcgacataatactgacatgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctgtgaattcaaaggtgaatcagg |
33652875 |
T |
|
| Q |
314 |
aaatagaagaaagcaatgctacctcaccgaaagtctcagagattcaaatctctgctcctcc |
374 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
33652874 |
aaatagaagaaagcaatgctacctcacctaaagtctcagagattcaaatctctactcctcc |
33652814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 194 - 374
Target Start/End: Complemental strand, 2626559 - 2626379
Alignment:
| Q |
194 |
cttcacttcatggcgataataaccaacctcgacataatactgacatgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctgt |
293 |
Q |
| |
|
||||||||| ||| ||||||||||||| |||| |||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2626559 |
cttcacttcgtggtgataataaccaacttcgaaataatactaacatgatcacaacttctacagctgcattacctaacaaaccattaatatatactgctgt |
2626460 |
T |
|
| Q |
294 |
gaattcaaaggtgaatcaggaaatagaagaaagcaatgctacctcaccgaaagtctcagagattcaaatctctgctcctcc |
374 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||| |||||||||||||| ||||||| |
|
|
| T |
2626459 |
gaattctaaggtgaatcaggaaatagaagaaagtaatgttacctcacctaaagtctcatagattcaaatctctactcctcc |
2626379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 194 - 373
Target Start/End: Complemental strand, 22977462 - 22977283
Alignment:
| Q |
194 |
cttcacttcatggcgataataaccaacctcgacataatactgacatgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctgt |
293 |
Q |
| |
|
||||||||| ||| ||||||||||||| |||| |||||||| |||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22977462 |
cttcacttcgtggtgataataaccaacttcgaaataatactaacatgatcacaacttctacagatgcattacctaacaaaccattaatatatactgctgt |
22977363 |
T |
|
| Q |
294 |
gaattcaaaggtgaatcaggaaatagaagaaagcaatgctacctcaccgaaagtctcagagattcaaatctctgctcctc |
373 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||| |||||||||||||| |||||| |
|
|
| T |
22977362 |
gaattctaaggtgaatcaggaaatagaagaaagtaatgttacctcacctaaagtctcatagattcaaatctctactcctc |
22977283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 194 - 373
Target Start/End: Original strand, 23810940 - 23811119
Alignment:
| Q |
194 |
cttcacttcatggcgataataaccaacctcgacataatactgacatgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctgt |
293 |
Q |
| |
|
||||||||| ||| ||||||||||||| |||| |||||||| |||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23810940 |
cttcacttcgtggtgataataaccaacttcgaaataatactaacatgatcacaacttctacagttgcattacctaacaaaccattaatatatactgctgt |
23811039 |
T |
|
| Q |
294 |
gaattcaaaggtgaatcaggaaatagaagaaagcaatgctacctcaccgaaagtctcagagattcaaatctctgctcctc |
373 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||| |||||||||||||| |||||| |
|
|
| T |
23811040 |
gaattctaaggtgaatcaggaaatagaagaaagtaatgttacctcacctaaagtctcatagattcaaatctctactcctc |
23811119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 254 - 374
Target Start/End: Original strand, 34325111 - 34325231
Alignment:
| Q |
254 |
cagctgcaatacctaacaaaccattaatatatactgctgtgaattcaaaggtgaatcaggaaatagaagaaagcaatgctacctcaccgaaagtctcaga |
353 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||| |||| ||||||||| ||||||| ||| |
|
|
| T |
34325111 |
cagctgcattacctaacaaaccattaatatatactgttgtgaattctaaggtgaatcagaaaatagaagaaagtaatgttacctcacctaaagtctgaga |
34325210 |
T |
|
| Q |
354 |
gattcaaatctctgctcctcc |
374 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
34325211 |
gattcaaatctctactcctcc |
34325231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 194 - 374
Target Start/End: Complemental strand, 45288146 - 45287965
Alignment:
| Q |
194 |
cttcacttcatggcgataataaccaacctcgacataatactga-catgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctg |
292 |
Q |
| |
|
||||||||| ||| ||||||||||||| |||| |||||||| | ||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
45288146 |
cttcacttcgtggtgataataaccaacttcgaaataatactaaacatgatcacaacttctacagctgcattacctaacaaaccatcaatatatactgctg |
45288047 |
T |
|
| Q |
293 |
tgaattcaaaggtgaatcaggaaatagaagaaagcaatgctacctcaccgaaagtctcagagattcaaatctctgctcctcc |
374 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
45288046 |
tgaattctaaggtgaatcaggaaatagaagaaagtaatgttacctcacctaaagtctcagagattcaaatctctactcctcc |
45287965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 194 - 374
Target Start/End: Original strand, 3753064 - 3753245
Alignment:
| Q |
194 |
cttcacttcatggcgataataaccaacctcgacataatactga-catgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctg |
292 |
Q |
| |
|
||||||| | ||| ||||||||||||| |||| |||||||| | ||||||||||| |||||| |||| | |||||||||||||||||||||||||||||| |
|
|
| T |
3753064 |
cttcactccgtggtgataataaccaacttcgaaataatactaaacatgatcacaacttctactgctgtattacctaacaaaccattaatatatactgctg |
3753163 |
T |
|
| Q |
293 |
tgaattcaaaggtgaatcaggaaatagaagaaagcaatgctacctcaccgaaagtctcagagattcaaatctctgctcctcc |
374 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||| |||| ||||||||| |||||||||||||||||||| ||| ||||||| |
|
|
| T |
3753164 |
tgaattctaaggtgaatcagaaaatagaagaaagtaatgttacctcacctaaagtctcagagattcaaatatctactcctcc |
3753245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 194 - 350
Target Start/End: Original strand, 19251792 - 19251949
Alignment:
| Q |
194 |
cttcacttcatggcgataataaccaacctcgacataatactga-catgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctg |
292 |
Q |
| |
|
||||||||| ||| ||||||||||||| |||| |||||||| | ||||||||||| |||||||| |||| ||||||||||||||||||||||||| | || |
|
|
| T |
19251792 |
cttcacttcgtggtgataataaccaacttcgaaataatactaaacatgatcacaacttctacagttgcattacctaacaaaccattaatatataccgttg |
19251891 |
T |
|
| Q |
293 |
tgaattcaaaggtgaatcaggaaatagaagaaagcaatgctacctcaccgaaagtctc |
350 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||| ||||||||| |||||||| |
|
|
| T |
19251892 |
tgaattctaaggtgaatcaggaaatagaagaaagtaatgttacctcacctaaagtctc |
19251949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 194 - 350
Target Start/End: Original strand, 19324976 - 19325133
Alignment:
| Q |
194 |
cttcacttcatggcgataataaccaacctcgacataatactga-catgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctg |
292 |
Q |
| |
|
||||||||| ||| ||||||||||||| |||| |||||||| | ||||||||||| |||||||| |||| ||||||||||||||||||||||||| | || |
|
|
| T |
19324976 |
cttcacttcgtggtgataataaccaacttcgaaataatactaaacatgatcacaacttctacagttgcattacctaacaaaccattaatatataccgttg |
19325075 |
T |
|
| Q |
293 |
tgaattcaaaggtgaatcaggaaatagaagaaagcaatgctacctcaccgaaagtctc |
350 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||| ||||||||| |||||||| |
|
|
| T |
19325076 |
tgaattctaaggtgaatcaggaaatagaagaaagtaatgttacctcacctaaagtctc |
19325133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 194 - 374
Target Start/End: Original strand, 42921847 - 42922028
Alignment:
| Q |
194 |
cttcacttcatggcgataataaccaacctcgacataatactga-catgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctg |
292 |
Q |
| |
|
||||||||| ||| ||||||||||||| | || |||||||| | ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42921847 |
cttcacttcgtggtgataataaccaactttgaaataatactaaacatgatcacaacttctacagctgcattacctaacaaaccattaatatatactgctg |
42921946 |
T |
|
| Q |
293 |
tgaattcaaaggtgaatcaggaaatagaagaaagcaatgctacctcaccgaaagtctcagagattcaaatctctgctcctcc |
374 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
42921947 |
tgaattctaaggtgaatcaggaaatagaagaaagtaatgttacctcacctaaagtctcagagattcaaatctctactcctcc |
42922028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 194 - 374
Target Start/End: Complemental strand, 47388908 - 47388727
Alignment:
| Q |
194 |
cttcacttcatggcgataataaccaacctcgacataatactga-catgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctg |
292 |
Q |
| |
|
||||||||| || ||||||||||||| |||| |||||||| | ||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
47388908 |
cttcacttcgtgttgataataaccaacttcgaaataatactaaacatgatcacaacttcaacagctgcattacctaacaaaccattaatatatactgctg |
47388809 |
T |
|
| Q |
293 |
tgaattcaaaggtgaatcaggaaatagaagaaagcaatgctacctcaccgaaagtctcagagattcaaatctctgctcctcc |
374 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
47388808 |
tgaattctaaggtgaatcaggaaatagaagaaagaaatgttacctcacctaaagtctcagagattcaaatctctactcctcc |
47388727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University