View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14334_low_17 (Length: 360)
Name: NF14334_low_17
Description: NF14334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14334_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 343
Target Start/End: Complemental strand, 8325679 - 8325349
Alignment:
| Q |
13 |
aatataaaaggccagcatagttccactttttatacataacaaaaatggcagaatcttcacacactaaaagcagtcttaggttagcaagcaaaatagccat |
112 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8325679 |
aatataaaaggctagcatggttccactttttatacataacaaaaatggcagaatcttcacacactaaaagcagtcttaggttagcaagcaaaatagccat |
8325580 |
T |
|
| Q |
113 |
tgtcaccggaggtgccagcggcatcggcaaagagacggcgcatgtctttgccgaacaaggtgcacgtatggtggtaatcgccgacatccaagatgagttg |
212 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8325579 |
tgtcaccggaggtgccagtggcatcggcaaagagacggcgcatgtctttgccgaacaaggtgcacgtatggtagtaatcgccgacatccaagatgagttg |
8325480 |
T |
|
| Q |
213 |
ggcaatgaagtggctgcatctattggcagccacaggtgcacctatgttcattgtgacgtaacgaacgaagatcaagtcaaaaatctcgttcaatcaacgg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8325479 |
ggcaatgaagtggctgcatctattggcagccacaggtgcacctatgttcattgtgatgtaacgaacgaagatcaagtcaaaaatctcgttcaatcaacag |
8325380 |
T |
|
| Q |
313 |
tcaatacttatggacaagtaaatattggtta |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
8325379 |
tcaatacttatggacaagtaaatattggtta |
8325349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 32 - 334
Target Start/End: Complemental strand, 8263156 - 8262854
Alignment:
| Q |
32 |
gttccactttttatacataacaaaaatggcagaatcttcacacactaaaagcagtcttaggttagcaagcaaaatagccattgtcaccggaggtgccagc |
131 |
Q |
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|||||| ||||||||||| | |||||||||||| | ||| |||||| ||| ||||||||||||| ||||| ||||||| |||||||||||||||||| |
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| T |
8263156 |
gttccattttttatacattaagaaaatggcagaagcatcatccactaacagcggtcttaggttagccggcaaagtagccatcgtcaccggaggtgccagc |
8263057 |
T |
|
| Q |
132 |
ggcatcggcaaagagacggcgcatgtctttgccgaacaaggtgcacgtatggtggtaatcgccgacatccaagatgagttgggcaatgaagtggctgcat |
231 |
Q |
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||||| |||||||||||||| ||| |||||||||||||||||||||| |||||||| || |||||||||||||| |||||||||||| |||||||||||| |
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| T |
8263056 |
ggcattggcaaagagacggcacatctctttgccgaacaaggtgcacgcatggtggtgattgccgacatccaagacgagttgggcaatcaagtggctgcat |
8262957 |
T |
|
| Q |
232 |
ctattggcagccacaggtgcacctatgttcattgtgacgtaacgaacgaagatcaagtcaaaaatctcgttcaatcaacggtcaatacttatggacaagt |
331 |
Q |
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| |||||||| | || ||||||||| |||||||||| || | || ||||||||||| |||||||||||||||||||| |||||| |||||||||| || |
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| T |
8262956 |
ccattggcagtcgcaagtgcacctacattcattgtgatatagcaaatgaagatcaagttaaaaatctcgttcaatcaactgtcaatgcttatggacaggt |
8262857 |
T |
|
| Q |
332 |
aaa |
334 |
Q |
| |
|
||| |
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|
| T |
8262856 |
aaa |
8262854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 8312601 - 8312402
Alignment:
| Q |
13 |
aatataaaaggccagcatagttccactttttatacataacaaaaatggcagaatcttcacacactaaaagcagtcttaggttagcaagcaaaatagccat |
112 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||| ||||||||||||| |
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| T |
8312601 |
aatataaaagaccagcatagttccactttttatacataacaaaaatggcagaatcttcattcactaacagcaatcttaggttagcaggcaaaatagccat |
8312502 |
T |
|
| Q |
113 |
tgtcaccggaggtgccagcggcatcggcaaagagacggcgcatgtctttgccgaacaaggtgcacgtatggtggtaatcgccgacatccaagatgagttg |
212 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| | |||||||| || |||||||||||||| |||||| |
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| T |
8312501 |
cgtcaccggaggtgccagcagcatcggcaaagagacggcgcatgtctttgtggaacaaggtgcatgcatggtggtgattgccgacatccaagacgagttg |
8312402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 195 - 325
Target Start/End: Complemental strand, 8309471 - 8309341
Alignment:
| Q |
195 |
gacatccaagatgagttgggcaatgaagtggctgcatctattggcagccacaggtgcacctatgttcattgtgacgtaacgaacgaagatcaagtcaaaa |
294 |
Q |
| |
|
||||||||||||||| | || ||| |||| ||||| || || |||| ||| ||||||||||| | ||||||||||| || | ||||||||||| |||| |
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| T |
8309471 |
gacatccaagatgagcttggaaatcaagtagctgcgtccataggcaaccaaaggtgcacctacatccattgtgacgtgacagatgaagatcaagttaaaa |
8309372 |
T |
|
| Q |
295 |
atctcgttcaatcaacggtcaatacttatgg |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
8309371 |
atctcgttcaatcaacggtcaatacttatgg |
8309341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 328
Target Start/End: Complemental strand, 8257672 - 8257444
Alignment:
| Q |
100 |
gcaaaatagccattgtcaccggaggtgccagcggcatcggcaaagagacggcgcatgtctttgccgaacaaggtgcacgtatggtggtaatcgccgacat |
199 |
Q |
| |
|
||||||||||||| || || |||||||| || |||||||| ||| ||||| | ||||||||| | |||| | || |||| || ||||||||||| |
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| T |
8257672 |
gcaaaatagccatcgtgacaggaggtgctagtggcatcggtgaagccacggcacgtgtctttgctaatgaaggcgtgcgcgtggttgtgatcgccgacat |
8257573 |
T |
|
| Q |
200 |
ccaagatgagttgggcaatgaagtggctgcatctattggcagccacaggtgcacctatgttcattgtgacgtaacgaacgaagatcaagtcaaaaatctc |
299 |
Q |
| |
|
|||||||||| | || ||| |||| |||||||| ||||||||||| |||||||| || | || || || || || | ||||||||||||||||| || |
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| T |
8257572 |
ccaagatgagcttggaaatcaagtagctgcatccattggcagccaaaggtgcacttacatccactgcgatgtcacagatgaagatcaagtcaaaaaccta |
8257473 |
T |
|
| Q |
300 |
gttcaatcaacggtcaatacttatggaca |
328 |
Q |
| |
|
|||||||||||||| ||||||||||||| |
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| T |
8257472 |
gttcaatcaacggttgatacttatggaca |
8257444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 189 - 328
Target Start/End: Complemental strand, 8259930 - 8259791
Alignment:
| Q |
189 |
atcgccgacatccaagatgagttgggcaatgaagtggctgcatctattggcagccacaggtgcacctatgttcattgtgacgtaacgaacgaagatcaag |
288 |
Q |
| |
|
||||| ||||||||||||||| | || ||| |||| |||||||| ||||||| ||| |||||||| || | |||||||| || | | |||||||||| |
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|
| T |
8259930 |
atcgcggacatccaagatgagcttggaaatcaagtagctgcatccattggcatccaaaggtgcacttacatccattgtgatgtggcagatgaagatcaag |
8259831 |
T |
|
| Q |
289 |
tcaaaaatctcgttcaatcaacggtcaatacttatggaca |
328 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||| |
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|
| T |
8259830 |
tcaaaaatctcgttcgatcaacggtagatacttatggaca |
8259791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 90 - 328
Target Start/End: Complemental strand, 8290288 - 8290050
Alignment:
| Q |
90 |
aggttagcaagcaaaatagccattgtcaccggaggtgccagcggcatcggcaaagagacggcgcatgtctttgccgaacaaggtgcacgtatggtggtaa |
189 |
Q |
| |
|
|||||| || ||||||||||||| |||| ||||||||||| |||||||| ||| ||||||||||||||||| | |||| || | || || | |
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| T |
8290288 |
aggttatcaggcaaaatagccatcatcacaggaggtgccagtggcatcggtgaagccacggcgcatgtctttgctaacgaaggcgccagccatgttgtga |
8290189 |
T |
|
| Q |
190 |
tcgccgacatccaagatgagttgggcaatgaagtggctgcatctattggcagccacaggtgcacctatgttcattgtgacgtaacgaacgaagatcaagt |
289 |
Q |
| |
|
| || || ||||||||||| | |||||| |||| ||| | || || |||| ||| ||||||||||| | || || || ||| | ||||||||||||| |
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|
| T |
8290188 |
ttgctgatatccaagatgaacttggcaatcaagtagctacgtccatcggcaaccaaaggtgcacctacatccactgcgatgtagcagacgaagatcaagt |
8290089 |
T |
|
| Q |
290 |
caaaaatctcgttcaatcaacggtcaatacttatggaca |
328 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
8290088 |
caaaaatctcattcaatcaacggttaatacttatggaca |
8290050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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