View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14334_low_18 (Length: 346)
Name: NF14334_low_18
Description: NF14334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14334_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 3174986 - 3174657
Alignment:
| Q |
1 |
tcgagatggagcacactcccagatcccaagtctattactagtacatgttggatattggactcccttcctccgcaaagaaacgcctaaatatgttaatttg |
100 |
Q |
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| T |
3174986 |
tcgagatggagcacactcccagatcccaagtctattactagtacatgttggatattggactcccttcctccgcaaagaaaagcctaaatatgttaatttg |
3174887 |
T |
|
| Q |
101 |
atatgtctcacttatataagtggagagagatcgtaatagggtgagaaggagtgnnnnnnnggtaagagtaaacaccaaagagagnnnnnnncagtgaaag |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||| |
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| T |
3174886 |
atatgtatcacttatataagtggagagagatcgtaatagggtgagaaggagtgtttttttggtaagagtaaacaccaaagagagaaaaaaacaatgaaag |
3174787 |
T |
|
| Q |
201 |
caaatctcacttttctcaaacttgacttactaaaatagcgattacaaattcgttaaccattgaatcgcgtggatgtttgcagagcaagttcgcaacaaaa |
300 |
Q |
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| T |
3174786 |
caaatctcgcttttctcaaacttgactcactaaaata-tgattacaaattcgttaaccattgaatcgtgtggatgtttgcagagcaagttcgcaacaaaa |
3174688 |
T |
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| Q |
301 |
caagatttgagtagagagaaatctgtttggt |
331 |
Q |
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|||| |||||||||||||||||||||||||| |
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| T |
3174687 |
caaggtttgagtagagagaaatctgtttggt |
3174657 |
T |
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