View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14334_low_19 (Length: 343)
Name: NF14334_low_19
Description: NF14334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14334_low_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 6973902 - 6974240
Alignment:
| Q |
1 |
tttaacagtatataataggccttggaattattcatttacttcgtagagaagattttcttaatat--atgctagtatgaaaggagagatcaattggtacgt |
98 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6973902 |
tttaacagtatataataggccttggatttattcatttacttcgtagagaagattttcttaatatatatgctagtatgaaaggagagatcaattggtacgt |
6974001 |
T |
|
| Q |
99 |
gctcattttttgagcccatggtatgcttgcttttatatagcttttttgattcctcattttgttgcctagctagttttggaaagaaaagaaaggataacga |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6974002 |
gctcattttttgagcccatggtatgcttgcttttatatagcttttttgattcctcattttgttgcctagctagttttggaaagaaaagaaaggataacga |
6974101 |
T |
|
| Q |
199 |
cacaatttatattttatataagtgacgtgtcttatgtatgcctaaaaattatccaccacatatttcactctcaacccaaaataataatcttatcatggag |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6974102 |
cacaatttatattttatataagtgacgtgtcttatgaatgcctaaaaactatccaccacatatttcactctcaacccaaaataataatcttatcatggag |
6974201 |
T |
|
| Q |
299 |
cacatcattccatagacaaaaaccaataccaagtataat |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6974202 |
cacatcattccatagacaaaaaccaataccaagtataat |
6974240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University