View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14334_low_2 (Length: 637)

Name: NF14334_low_2
Description: NF14334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14334_low_2
NF14334_low_2
[»] chr4 (22 HSPs)
chr4 (327-601)||(44076657-44076931)
chr4 (13-196)||(44076458-44076645)
chr4 (151-260)||(52430531-52430640)
chr4 (196-260)||(11976898-11976962)
chr4 (86-154)||(35959122-35959190)
chr4 (196-260)||(46669901-46669965)
chr4 (198-260)||(21443085-21443147)
chr4 (198-260)||(27143241-27143303)
chr4 (196-260)||(8827776-8827840)
chr4 (196-260)||(15498750-15498814)
chr4 (199-259)||(43929762-43929822)
chr4 (86-154)||(46177014-46177082)
chr4 (197-260)||(368119-368182)
chr4 (201-260)||(16006285-16006344)
chr4 (196-258)||(28175422-28175484)
chr4 (194-260)||(49936561-49936627)
chr4 (92-154)||(52636693-52636755)
chr4 (199-260)||(40423029-40423090)
chr4 (196-260)||(41709074-41709139)
chr4 (198-259)||(42650699-42650760)
chr4 (194-223)||(52554992-52555021)
chr4 (200-260)||(28880056-28880116)
[»] chr2 (17 HSPs)
chr2 (124-260)||(4003392-4003533)
chr2 (196-293)||(16519017-16519109)
chr2 (196-293)||(16625732-16625824)
chr2 (173-260)||(36870282-36870368)
chr2 (96-154)||(26599336-26599394)
chr2 (196-260)||(11522136-11522200)
chr2 (92-152)||(16625870-16625930)
chr2 (86-154)||(21834867-21834935)
chr2 (196-260)||(28539382-28539446)
chr2 (196-260)||(39205078-39205142)
chr2 (125-260)||(44953976-44954112)
chr2 (194-256)||(3039251-3039313)
chr2 (198-260)||(22101661-22101723)
chr2 (199-260)||(9087421-9087482)
chr2 (199-260)||(9087654-9087715)
chr2 (197-242)||(31082867-31082912)
chr2 (196-260)||(1270659-1270722)
[»] chr5 (14 HSPs)
chr5 (124-260)||(43496837-43496976)
chr5 (195-293)||(6044593-6044686)
chr5 (198-260)||(2679842-2679904)
chr5 (198-259)||(9621898-9621959)
chr5 (173-242)||(18671051-18671119)
chr5 (194-259)||(41923217-41923282)
chr5 (196-260)||(3081288-3081352)
chr5 (196-260)||(6491245-6491309)
chr5 (196-260)||(15974401-15974465)
chr5 (202-260)||(8944112-8944170)
chr5 (198-260)||(15399878-15399940)
chr5 (196-260)||(1935063-1935127)
chr5 (196-260)||(4841665-4841729)
chr5 (196-260)||(15916944-15917008)
[»] chr6 (9 HSPs)
chr6 (173-260)||(4464964-4465051)
chr6 (86-295)||(26713789-26714008)
chr6 (197-260)||(33212382-33212445)
chr6 (198-260)||(2502322-2502384)
chr6 (194-260)||(20381822-20381888)
chr6 (194-260)||(26289610-26289676)
chr6 (198-260)||(28551851-28551913)
chr6 (199-260)||(33677088-33677148)
chr6 (196-260)||(29054628-29054692)
[»] chr1 (22 HSPs)
chr1 (196-260)||(38857969-38858033)
chr1 (198-262)||(42333697-42333761)
chr1 (173-260)||(49102928-49103014)
chr1 (93-260)||(43036279-43036459)
chr1 (194-260)||(5883560-5883625)
chr1 (199-257)||(36385403-36385461)
chr1 (196-256)||(5970401-5970461)
chr1 (86-154)||(7915439-7915507)
chr1 (172-260)||(32672631-32672718)
chr1 (86-154)||(50586974-50587041)
chr1 (178-261)||(20712171-20712253)
chr1 (196-255)||(29092147-29092206)
chr1 (196-242)||(6015492-6015538)
chr1 (196-258)||(34154296-34154358)
chr1 (194-260)||(36668605-36668671)
chr1 (129-260)||(50226009-50226155)
chr1 (196-260)||(34918698-34918763)
chr1 (22-59)||(46202222-46202259)
chr1 (93-146)||(47742464-47742517)
chr1 (196-260)||(33324684-33324748)
chr1 (180-260)||(36325761-36325840)
chr1 (200-260)||(37955243-37955303)
[»] chr7 (19 HSPs)
chr7 (173-260)||(17818325-17818411)
chr7 (173-260)||(35264848-35264934)
chr7 (199-260)||(43741401-43741462)
chr7 (196-260)||(1277999-1278063)
chr7 (196-260)||(13044208-13044272)
chr7 (194-258)||(23551705-23551769)
chr7 (196-260)||(33187803-33187867)
chr7 (196-260)||(38505300-38505364)
chr7 (173-260)||(44487291-44487379)
chr7 (200-259)||(12624331-12624390)
chr7 (29-64)||(33871782-33871817)
chr7 (198-293)||(42622414-42622504)
chr7 (196-293)||(42112887-42112979)
chr7 (173-242)||(19791709-19791774)
chr7 (196-260)||(33872076-33872140)
chr7 (196-260)||(42010144-42010208)
chr7 (196-260)||(42266963-42267027)
chr7 (196-260)||(43348195-43348259)
chr7 (199-293)||(48935034-48935125)
[»] chr8 (21 HSPs)
chr8 (196-260)||(40985030-40985094)
chr8 (196-260)||(12506152-12506216)
chr8 (194-293)||(39193990-39194084)
chr8 (167-258)||(43007731-43007821)
chr8 (92-154)||(39193863-39193925)
chr8 (196-260)||(31149963-31150027)
chr8 (29-64)||(79442-79477)
chr8 (194-257)||(13227769-13227832)
chr8 (173-260)||(29584213-29584299)
chr8 (198-260)||(32216-32278)
chr8 (196-258)||(23932506-23932568)
chr8 (194-260)||(29612050-29612116)
chr8 (194-260)||(38404400-38404466)
chr8 (194-260)||(41866083-41866149)
chr8 (199-260)||(41455323-41455384)
chr8 (196-260)||(1839776-1839840)
chr8 (196-260)||(16424199-16424263)
chr8 (151-195)||(27085345-27085389)
chr8 (196-260)||(27085409-27085473)
chr8 (196-260)||(32158826-32158890)
chr8 (197-257)||(34336092-34336152)
[»] chr3 (13 HSPs)
chr3 (196-287)||(29623297-29623383)
chr3 (198-260)||(27922024-27922086)
chr3 (124-260)||(49183660-49183810)
chr3 (151-260)||(32721038-32721145)
chr3 (199-260)||(40674171-40674232)
chr3 (196-260)||(19148228-19148292)
chr3 (198-258)||(32708788-32708848)
chr3 (196-260)||(48444566-48444630)
chr3 (194-260)||(35989165-35989231)
chr3 (86-154)||(3707032-3707099)
chr3 (196-260)||(35283148-35283212)
chr3 (200-256)||(46175233-46175289)
chr3 (196-260)||(53888548-53888612)
[»] scaffold0648 (1 HSPs)
scaffold0648 (199-259)||(7397-7457)
[»] scaffold0119 (2 HSPs)
scaffold0119 (196-260)||(37182-37246)
scaffold0119 (196-260)||(30515-30578)
[»] scaffold0263 (1 HSPs)
scaffold0263 (198-260)||(12215-12277)
[»] scaffold0002 (1 HSPs)
scaffold0002 (198-259)||(90842-90903)
[»] scaffold0036 (1 HSPs)
scaffold0036 (86-154)||(82722-82790)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 327 - 601
Target Start/End: Original strand, 44076657 - 44076931
Alignment:
Q  327 tatttctccattttcttctatatttctagtcccatgaccctccttttctctctcc-aaacttccaaactaaacctaatataaggttcaaatgttacctat 425  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  44076657 tatttctccattttcttccatatttctcgtcccatgaccctccttttctctcccccaaacttccaaactaaacctaatataaggttcaaatgttacctat 44076756  T
Q  426 tacgtttgacatagatggttggacttttccgcttatgactgatgtaactcggatccaagttaaaattctataattgataagctatccacaaattccattg 525  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44076757 tacgtttgacatagatggttggacttttccgcttatgactgatgcaactccgatccaagttaaa-ttctataattgataagctatccacaaattccattg 44076855  T
Q  526 taattctttaatttaattgtggatggttctctccagctttatatacatggagctaattgtgtatggcctaatctac 601  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44076856 taattctttaatttaatggtggatggttctctccagctttatatacatggagctagttgtgtatggcctaatctac 44076931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 44076458 - 44076645
Alignment:
Q  13 aatattacactaagattttgtttgcgagtttggaggggaggtgaagggaagggaggattttgnnnnnnnnncaaaggaacaagtggaaaaaatagagaac 112  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||         |||||||||||||| ||||||||||||||    
T  44076458 aatattacactaagactttgtttgcgagtttggaggggaggggaagggaagggaggattttgaaaaaaaa-caaaggaacaagtgaaaaaaatagagaac 44076556  T
Q  113 attgagatgaaagggctttgggggattaatttttcttcat-----aaaactcttctcacttggaaaactaaaaaattgtatttgaggaa 196  Q
    ||||||||||||||||||||||||||||||||||||||||     |||||||||||||||| |  ||||||||||||||||||||||||    
T  44076557 attgagatgaaagggctttgggggattaatttttcttcataatacaaaactcttctcacttagggaactaaaaaattgtatttgaggaa 44076645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 52430640 - 52430531
Alignment:
Q  151 ataaaactcttctcactt-ggaaaactaaaaaattgtatttgaggaagggtttatatgaattctttaaatttaattcatattgttatagtattataaata 249  Q
    |||||||||| |||| || || ||||||||||||| |||| ||||| || ||||||||||||||| |||||||||  || |||||||| |||| | || |    
T  52430640 ataaaactctcctcatttagggaaactaaaaaattatattggaggatgg-tttatatgaattcttcaaatttaatatatgttgttataatatttttaaaa 52430542  T
Q  250 ttaaaaatata 260  Q
    |||||||||||    
T  52430541 ttaaaaatata 52430531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 11976898 - 11976962
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    |||||||||||||||| ||||||||||||  || |||||||| |||| | |||||||||||||||    
T  11976898 agggtttatatgaattttttaaatttaatatatgttgttataatattcttaatattaaaaatata 11976962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 35959122 - 35959190
Alignment:
Q  86 aaggaacaagtggaaaaaatagagaacattgagatgaaagggctttgggggattaatttttcttcataa 154  Q
    ||||| ||||||||| |||||||| |||||| || |  ||||||||||||| |||||||||||||||||    
T  35959122 aaggagcaagtggaagaaatagagtacattgtgaggggagggctttgggggtttaatttttcttcataa 35959190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 46669965 - 46669901
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    |||||||||||||||||||||||||||||  || |||||||| |||| | || ||||||||||||    
T  46669965 agggtttatatgaattctttaaatttaatatatgttgttataatattcttaaaattaaaaatata 46669901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 21443085 - 21443147
Alignment:
Q  198 ggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||| |||||||||  ||||| ||||| |||| |||| ||||||||||||    
T  21443085 ggtttatatgaattcttcaaatttaatatatattattataatattttaaaaattaaaaatata 21443147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 27143241 - 27143303
Alignment:
Q  198 ggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||| |||||||||  ||||||||||| |||| | || ||||||||||||    
T  27143241 ggtttatatgaattcttcaaatttaatatatattgttataatattcttaaaattaaaaatata 27143303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 8827840 - 8827776
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||| ||||||| |||||||||  || |||||||| |||| | |||||||||||||||    
T  8827840 agggtttatatcaattcttcaaatttaatctatgttgttataatattcttaatattaaaaatata 8827776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 15498814 - 15498750
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    |||||||| ||||||||||||||||||||  | || |||||| |||| |||| ||||||||||||    
T  15498814 agggtttacatgaattctttaaatttaatctaaatagttataatattctaaaaattaaaaatata 15498750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 199 - 259
Target Start/End: Complemental strand, 43929822 - 43929762
Alignment:
Q  199 gtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatat 259  Q
    ||||||||||||||||||||||||||   |||||||||| |||| | || |||||||||||    
T  43929822 gtttatatgaattctttaaatttaatatttattgttataatatttttaaaattaaaaatat 43929762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 46177082 - 46177014
Alignment:
Q  86 aaggaacaagtggaaaaaatagagaacattgagatgaaagggctttgggggattaatttttcttcataa 154  Q
    ||||||||||||||| |||||||| |||||| || |  |||| |||||||| |||||||||||| ||||    
T  46177082 aaggaacaagtggaagaaatagagtacattgggaggggagggttttggggggttaatttttcttaataa 46177014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 368119 - 368182
Alignment:
Q  197 gggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||| |||||||||||| |||||||||| || |||||||| |||| | || ||||||||||||    
T  368119 gggttcatatgaattcttcaaatttaatttatgttgttataatatttttaaaattaaaaatata 368182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 16006344 - 16006285
Alignment:
Q  201 ttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    |||| |||||| || |||||||||| ||||||||||| |||| | |||||||||||||||    
T  16006344 ttatgtgaatttttcaaatttaatttatattgttataatattcttaatattaaaaatata 16006285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 28175484 - 28175422
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaata 258  Q
    |||||| ||| ||||||||||||||||||| || |||||||| |||| | || ||||||||||    
T  28175484 agggttaataagaattctttaaatttaatttatgttgttataatatttttaaaattaaaaata 28175422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 49936561 - 49936627
Alignment:
Q  194 gaagggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||||||| ||||| |||  || |||||||| |||| | || ||||||||||||    
T  49936561 gaagggtttatatgaattcttcaaattcaatctatgttgttataatattcttaaaattaaaaatata 49936627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 52636693 - 52636755
Alignment:
Q  92 caagtggaaaaaatagagaacattg--agatgaaagggctttgggggattaatttttcttcataa 154  Q
    ||||||||| |||||||| ||||||  ||||||  |||||||||||| |||||||||||||||||    
T  52636693 caagtggaagaaatagagtacattggaagatga--gggctttggggggttaatttttcttcataa 52636755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 40423090 - 40423029
Alignment:
Q  199 gtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    |||||||||||||||| |||||||||  || |||||||| |||| | || ||||||||||||    
T  40423090 gtttatatgaattcttcaaatttaatctatgttgttataatattcttaaaattaaaaatata 40423029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 41709139 - 41709074
Alignment:
Q  196 agggtttatatgaa-ttctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    |||||||||||||| ||||| ||||||||| ||| |||||||| |||| | || ||||||||||||    
T  41709139 agggtttatatgaaattcttcaaatttaatacatgttgttatattatttttaaaattaaaaatata 41709074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 259
Target Start/End: Original strand, 42650699 - 42650760
Alignment:
Q  198 ggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatat 259  Q
    ||||||||||||||||| |||||||||| || | |||||| |||| | || |||||||||||    
T  42650699 ggtttatatgaattcttcaaatttaatttatgtcgttataatattcttaaaattaaaaatat 42650760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 223
Target Start/End: Complemental strand, 52555021 - 52554992
Alignment:
Q  194 gaagggtttatatgaattctttaaatttaa 223  Q
    ||||||||||||||||||||||||||||||    
T  52555021 gaagggtttatatgaattctttaaatttaa 52554992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 28880056 - 28880116
Alignment:
Q  200 tttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||| |||||||||  || |||||||| |||| | || ||||||||||||    
T  28880056 tttatatgaattcttcaaatttaatatatgttgttataatattcttaaaattaaaaatata 28880116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 124 - 260
Target Start/End: Original strand, 4003392 - 4003533
Alignment:
Q  124 agggctttgggggattaatttttcttcataa-----aactcttctcacttggaa-aactaaaaaattgtatttgaggaagggtttatatgaattctttaa 217  Q
    ||||||||||||| |||||||||||||||||     |||||| |||| ||||   |||| |||||||||||| ||||| |||||||| ||||||||| ||    
T  4003392 agggctttggggggttaatttttcttcataatacaaaactctcctcatttgggggaactcaaaaattgtattggagga-gggtttatgtgaattcttcaa 4003490  T
Q  218 atttaattcatattgttatagtattataaatattaaaaatata 260  Q
    |||||||| || |||| ||| |||| |||| ||||||||||||    
T  4003491 atttaatttatgttgtaataatattttaaaaattaaaaatata 4003533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 196 - 293
Target Start/End: Complemental strand, 16519109 - 16519017
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatatacggtatgaatgataagcattagtttataattct 293  Q
    ||||||||||||||||| | ||||||| || || |||||||| |||| | |||||||||||||     ||||||| |||||||||||||||| |||||    
T  16519109 agggtttatatgaattcatcaaatttattttatgttgttataatattcttaatattaaaaata-----tatgaatcataagcattagtttatgattct 16519017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 196 - 293
Target Start/End: Complemental strand, 16625824 - 16625732
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatatacggtatgaatgataagcattagtttataattct 293  Q
    ||||||||||||||||||| |||||||||  || |||||||| |||| | |||||||||||||     ||||||| ||||||||| |||||| |||||    
T  16625824 agggtttatatgaattcttcaaatttaatctatgttgttataatattcttaatattaaaaata-----tatgaatcataagcattggtttatcattct 16625732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 173 - 260
Target Start/End: Original strand, 36870282 - 36870368
Alignment:
Q  173 aactaaaaaattgtatttgaggaagggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||| ||||| |||||||||||||||||| || ||||||  |  |||||||| |||| | || ||||||||||||    
T  36870282 aactaaaaaattgtattggagga-gggtttatatgaattcttcaattttaatatacgttgttataatattcttaaaattaaaaatata 36870368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 154
Target Start/End: Complemental strand, 26599394 - 26599336
Alignment:
Q  96 tggaaaaaatagagaacattgagatgaaagggctttgggggattaatttttcttcataa 154  Q
    ||||||||||||||| ||||| || | |||||||||||||| || ||||||||||||||    
T  26599394 tggaaaaaatagagagcattgggagggaagggctttggggggttcatttttcttcataa 26599336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 11522200 - 11522136
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||||| |||||||||  || |||||||| |||| | || ||||||||||||    
T  11522200 agggtttatatgaattcttcaaatttaatatatgttgttataatattcttaaaattaaaaatata 11522136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 16625930 - 16625870
Alignment:
Q  92 caagtggaaaaaatagagaacattgagatgaaagggctttgggggattaatttttcttcat 152  Q
    ||||||||| |||||||| |||||| || |  ||||||||||||| |||||||||||||||    
T  16625930 caagtggaagaaatagagtacattgggaggggagggctttggggggttaatttttcttcat 16625870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 21834867 - 21834935
Alignment:
Q  86 aaggaacaagtggaaaaaatagagaacattgagatgaaagggctttgggggattaatttttcttcataa 154  Q
    ||||| ||||||||| ||| |||| |||| | || | ||||||||||| ||||||||||||||||||||    
T  21834867 aaggagcaagtggaagaaacagaggacatcgggacggaagggctttggaggattaatttttcttcataa 21834935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 28539446 - 28539382
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||||| |||||||||  || |||||||| |||| | || ||||||||||||    
T  28539446 agggtttatatgaattcttcaaatttaatctatgttgttatattatttttaaaattaaaaatata 28539382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 39205078 - 39205142
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||||| |||||||||  || |||||||| |||| | || ||||||||||||    
T  39205078 agggtttatatgaattcttgaaatttaatctatgttgttatattatttttaaaattaaaaatata 39205142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 260
Target Start/End: Complemental strand, 44954112 - 44953976
Alignment:
Q  125 gggctttgggggattaatttttcttca-----taaaactcttctcacttggaaaactaaaaaattgtatttgaggaagggtttatatgaattctttaaat 219  Q
    |||||||||| |||| |||||||||||     |||||| || |||| ||  | ||||||||||||||||| |||||    ||||||||| ||||||||||    
T  44954112 gggctttgggagatttatttttcttcaaaatataaaaccctcctcattttaagaactaaaaaattgtattggagga----tttatatgagttctttaaat 44954017  T
Q  220 ttaattcatattgttatagtattataaatattaaaaatata 260  Q
    |||||  || || ||||| |||| | || ||||||||||||    
T  44954016 ttaatatatgttattataatattcttaaaattaaaaatata 44953976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 256
Target Start/End: Complemental strand, 3039313 - 3039251
Alignment:
Q  194 gaagggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaa 256  Q
    |||||||||||||||||| |||||||| |||  ||||||||||| |||| | || ||||||||    
T  3039313 gaagggtttatatgaattatttaaattcaatctatattgttataatattcttaaaattaaaaa 3039251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 22101661 - 22101723
Alignment:
Q  198 ggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||| |||||||||| ||||| ||||  |||| | || ||||||||||||    
T  22101661 ggtttatatgaattcttcaaatttaatttatattcttattatattcttaaaattaaaaatata 22101723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 9087482 - 9087421
Alignment:
Q  199 gtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    |||||||||||||||| |||||||||  || |||| ||| |||||| || ||||||||||||    
T  9087482 gtttatatgaattcttcaaatttaatatatgttgtcataatattattaaaattaaaaatata 9087421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 9087715 - 9087654
Alignment:
Q  199 gtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||| || |||||||||  ||||||| ||| |||||| || ||||||||||||    
T  9087715 gtttatatgaattattcaaatttaatatatattgtcataatattattaaaattaaaaatata 9087654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 31082867 - 31082912
Alignment:
Q  197 gggtttatatgaattctttaaatttaattcatattgttatagtatt 242  Q
    |||||||||||||||||| |||||||||| || |||||||| ||||    
T  31082867 gggtttatatgaattcttcaaatttaatttatgttgttataatatt 31082912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 1270722 - 1270659
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||||| |||||||| | || |||||||| |||| | || ||||||||||||    
T  1270722 agggtttatatgaattcttcaaatttaaat-atgttgttatattatttttaaaattaaaaatata 1270659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 124 - 260
Target Start/End: Complemental strand, 43496976 - 43496837
Alignment:
Q  124 agggctttgggggattaatttttcttcataa-----aactcttctcacttggaaaactaaaaaattgtatttgaggaagggtttatatgaattctttaaa 218  Q
    ||||||||||||| |||||||||||| ||||     |||||| |||| ||||  |||| |||||||||||| ||||| |||||||||||||||||| |||    
T  43496976 agggctttggggg-ttaatttttcttaataatacaaaactctgctcatttggggaacttaaaaattgtattggagga-gggtttatatgaattcttcaaa 43496879  T
Q  219 tttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||| || |||||||| |||| | || || |||||||||    
T  43496878 tttaatttatgttgttataatatttttaaaataaaaaatata 43496837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 195 - 293
Target Start/End: Original strand, 6044593 - 6044686
Alignment:
Q  195 aagggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatatacggtatgaatgataagcattagtttataattct 293  Q
    ||||||||||||  |||||| |||||||||| || |||||||| |||| | |||||||||||||     ||||||||||||| |||||||||| |||||    
T  6044593 aagggtttatatttattcttcaaatttaatttatgttgttataatattcttaatattaaaaata-----tatgaatgataagtattagtttatcattct 6044686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 260
Target Start/End: Complemental strand, 2679904 - 2679842
Alignment:
Q  198 ggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    |||||||||||||||||||||||||||  || |||||||| |||| | || ||||||||||||    
T  2679904 ggtttatatgaattctttaaatttaatctatgttgttataatatttttaaaattaaaaatata 2679842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 9621959 - 9621898
Alignment:
Q  198 ggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatat 259  Q
    ||||||||||||||||| |||||||||  ||||||||||| |||| | || |||||||||||    
T  9621959 ggtttatatgaattcttcaaatttaatctatattgttataatatttttaaaattaaaaatat 9621898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 18671051 - 18671119
Alignment:
Q  173 aactaaaaaattgtatttgaggaagggtttatatgaattctttaaatttaattcatattgttatagtatt 242  Q
    ||||||||||||||||| ||| |||||||||| ||||||||| |||||||||  || |||||||| ||||    
T  18671051 aactaaaaaattgtattggag-aagggtttatgtgaattcttcaaatttaatcaatgttgttatattatt 18671119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 41923217 - 41923282
Alignment:
Q  194 gaagggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatat 259  Q
    ||||||||||||||||||||| |||||||||  || |||||||| |||| | || |||||||||||    
T  41923217 gaagggtttatatgaattcttcaaatttaatctatgttgttataatatttttaagattaaaaatat 41923282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 3081352 - 3081288
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    |||||||||||||||||||||||||||||  || || ||||| |||| | || ||||||||||||    
T  3081352 agggtttatatgaattctttaaatttaatatatgttcttataatattcttaaaattaaaaatata 3081288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 6491245 - 6491309
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||||| |||||||| | || |||||||| |||| | || ||||||||||||    
T  6491245 agggtttatatgaattcttcaaatttaacttatgttgttataatattcttaaaattaaaaatata 6491309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 15974401 - 15974465
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    |||||||||| ||||||||||||||||||  || |||||||| |||| | || ||||||||||||    
T  15974401 agggtttatacgaattctttaaatttaatctatgttgttatattatttttaaaattaaaaatata 15974465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 202 - 260
Target Start/End: Original strand, 8944112 - 8944170
Alignment:
Q  202 tatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||| |||||||||  || |||||||| |||| |||| ||||||||||||    
T  8944112 tatatgaattcttcaaatttaatatatgttgttatattattttaaaaattaaaaatata 8944170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 15399878 - 15399940
Alignment:
Q  198 ggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    |||||||||||||||||||||||||||   | |||||||| |||| | || ||||||||||||    
T  15399878 ggtttatatgaattctttaaatttaatctttgttgttataatatttttaaaattaaaaatata 15399940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 1935127 - 1935063
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||| ||||||||| |||||||||  || |||||||| |||| | || ||||||||||||    
T  1935127 agggtttatgtgaattcttcaaatttaatatatgttgttataatattcttaaaattaaaaatata 1935063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 4841729 - 4841665
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||||| ||||| |||  || |||||||| |||| | || ||||||||||||    
T  4841729 agggtttatatgaattcttcaaattgaatatatgttgttataatattcttaaaattaaaaatata 4841665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 15916944 - 15917008
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    |||||||||| ||||||||||||||||||  || |||||||| |||| | || ||| ||||||||    
T  15916944 agggtttatacgaattctttaaatttaatatatgttgttataatattcttaaaatttaaaatata 15917008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 173 - 260
Target Start/End: Original strand, 4464964 - 4465051
Alignment:
Q  173 aactaaaaaattgtatttgaggaagggtttatatgaattctttaaa-tttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||| |||||| ||| |||||||| |||| | || ||||||||||||    
T  4464964 aactaaaaaattgtattggagga-gggtttatatgaattctttaaattttaatgcatgttgttataatatttttaaaattaaaaatata 4465051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 295
Target Start/End: Original strand, 26713789 - 26714008
Alignment:
Q  86 aaggaacaagtggaaaaaatagagaacattgagatgaaagggctttgggggattaatttttcttcat------aaaactcttctcacttggaaaactaaa 179  Q
    ||||| ||||||||| |||||||| |||||| || |  ||||||||| ||| |||||||||||||||      ||||  || |||| ||||  |||| ||    
T  26713789 aaggagcaagtggaagaaatagagtacattgggaggggagggctttgaggggttaatttttcttcatgataagaaaatcctcctcatttggggaactcaa 26713888  T
Q  180 aaattgtatttgagga---------agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatatacggtatgaat 270  Q
    |||||||||| |||||         ||||||||||||||||||| ||||||| |  || |||||||| |||| | |||||||||||||     |||||||    
T  26713889 aaattgtattggaggagggttttggagggtttatatgaattcttcaaatttattctatgttgttatattattcttaatattaaaaata-----tatgaat 26713983  T
Q  271 gataagcattagtttataattctat 295  Q
     |||||||||||||||| |||||||    
T  26713984 cataagcattagtttatcattctat 26714008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 33212382 - 33212445
Alignment:
Q  197 gggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    |||||||||||||||||| ||||||||| ||| |||||||| |||| | || ||||||||||||    
T  33212382 gggtttatatgaattcttcaaatttaatacatgttgttataatattcttaaaattaaaaatata 33212445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 260
Target Start/End: Complemental strand, 2502384 - 2502322
Alignment:
Q  198 ggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||| |||||||||  ||||||||||| |||| | || ||||||||||||    
T  2502384 ggtttatatgaattcttcaaatttaatatatattgttataatattcttaaaattaaaaatata 2502322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 20381888 - 20381822
Alignment:
Q  194 gaagggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||||||| || ||||||  || |||||||| |||| | || ||||||||||||    
T  20381888 gaagggtttatatgaattcttcaattttaatatatgttgttataatattcttaaaattaaaaatata 20381822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 26289610 - 26289676
Alignment:
Q  194 gaagggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||| ||||||||||||||| |||||||||  || |||||||| |||| | || ||||||||||||    
T  26289610 gaaggatttatatgaattcttcaaatttaatctatgttgttatattatttttaaaattaaaaatata 26289676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 198 - 260
Target Start/End: Complemental strand, 28551913 - 28551851
Alignment:
Q  198 ggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||| |||||||||| || |||||||| |||| | || ||||| ||||||    
T  28551913 ggtttatatgaattcttcaaatttaatttatgttgttataatatttttaaaattaacaatata 28551851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 33677088 - 33677148
Alignment:
Q  199 gtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    |||||||||||||||||||||||||||  | |||||||| |||| | || ||||||||||||    
T  33677088 gtttatatgaattctttaaatttaatt-gtgttgttataatattcttaaaattaaaaatata 33677148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 29054628 - 29054692
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    |||||||||||||||| || |||||||||  |||| |||||| |||||| || || |||||||||    
T  29054628 agggtttatatgaatttttcaaatttaatctatatggttataatattattaaaataaaaaatata 29054692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 38858033 - 38857969
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||| |||||| ||||||||||||||||||||||||| |||| | |||||||||||||||    
T  38858033 agggtttatgtgaattttttaaatttaattcatattgttataatattcttaatattaaaaatata 38857969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 198 - 262
Target Start/End: Original strand, 42333697 - 42333761
Alignment:
Q  198 ggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatatacg 262  Q
    ||||||||||||||||| |||||||||| ||| ||||||| |||||| |||||||||||||||||    
T  42333697 ggtttatatgaattcttcaaatttaatttatactgttataatattattaatattaaaaatatacg 42333761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 260
Target Start/End: Complemental strand, 49103014 - 49102928
Alignment:
Q  173 aactaaaaaattgtatttgaggaagggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||| ||||| |||||||||||||||||| |||||||||  || ||| |||| |||| | || ||||||||||||    
T  49103014 aactaaaaaattgtattggagga-gggtttatatgaattcttcaaatttaatatatgttgctataatattcttaaaattaaaaatata 49102928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 260
Target Start/End: Complemental strand, 43036459 - 43036279
Alignment:
Q  93 aagtggaaaaaatagagaacattgagatgaaagggctttgggggattaatttttcttca----taaaactcttctcacttggaa-aactaaaaaattgta 187  Q
    |||||||| |||||||| |||||| || ||  |||||||||||| ||||||||||||||    |||||| || |||| |||| | |||||||||||||||    
T  43036459 aagtggaagaaatagagtacattgggaggag-gggctttggggggttaatttttcttcaaatataaaaccctcctcatttgggagaactaaaaaattgta 43036361  T
Q  188 tttgaggaagg---------gtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    || |||| |||         |||||||||||||||| |||||||||  || |||||||| |||| | || ||||||||||||    
T  43036360 ttggagggaggtttgggagggtttatatgaattcttcaaatttaatctatgttgttataatattcttaaaattaaaaatata 43036279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 5883625 - 5883560
Alignment:
Q  194 gaagggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||||||| ||||||| || | ||||||||| |||| |||| ||||||||||||    
T  5883625 gaagggtttatatgaattcttcaaatttactttagattgttataatattttaaa-attaaaaatata 5883560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 257
Target Start/End: Original strand, 36385403 - 36385461
Alignment:
Q  199 gtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaat 257  Q
    ||||||||||||||||||||||||||| || |||||||| |||| | || |||||||||    
T  36385403 gtttatatgaattctttaaatttaatttatgttgttataatatttttaaaattaaaaat 36385461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 5970461 - 5970401
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaa 256  Q
    ||||||||||||||||||| ||||||| |  ||||||||||| |||| | |||||||||||    
T  5970461 agggtttatatgaattcttcaaatttattctatattgttataatattcttaatattaaaaa 5970401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 7915439 - 7915507
Alignment:
Q  86 aaggaacaagtggaaaaaatagagaacattgagatgaaagggctttgggggattaatttttcttcataa 154  Q
    ||||| ||||||||||||||||||||| ||| ||    ||||||||||||| || ||||||||||||||    
T  7915439 aaggagcaagtggaaaaaatagagaactttgggagaggagggctttggggggttcatttttcttcataa 7915507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 172 - 260
Target Start/End: Original strand, 32672631 - 32672718
Alignment:
Q  172 aaactaaaaaattgtatttgaggaagggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||||  ||||||| ||||||||||||||| | |||||||  || ||||| || |||| | || ||||||||||||    
T  32672631 aaactaaaaaattgtattaaaggaagg-tttatatgaattcttcatatttaatctatgttgttgtattatttttaaaattaaaaatata 32672718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 50586974 - 50587041
Alignment:
Q  86 aaggaacaagtggaaaaaatagagaacattgagatgaaagggctttgggggattaatttttcttcataa 154  Q
    ||||| ||||||||| |||||||| ||||||||| | | |||||||||||| || ||||||||||||||    
T  50586974 aaggagcaagtggaagaaatagaggacattgagaggga-gggctttggggggttcatttttcttcataa 50587041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 20712253 - 20712171
Alignment:
Q  178 aaaaattgtatttgaggaagggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatatac 261  Q
    |||||||||||| ||||| |||||||||| ||||||| ||||| |||  || |||||||| |||| | || |||||||||||||    
T  20712253 aaaaattgtattggagga-gggtttatataaattcttcaaattcaatctatgttgttataatatttttaaaattaaaaatatac 20712171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 29092147 - 29092206
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaa 255  Q
    |||||| ||| ||||||||||||||||||| ||||||||||| |||| | || |||||||    
T  29092147 agggttaataagaattctttaaatttaatttatattgttataatatttttaaaattaaaa 29092206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 6015492 - 6015538
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtatt 242  Q
    ||||||||||||||||||| |||||||||  || |||||||||||||    
T  6015492 agggtttatatgaattcttcaaatttaatatatgttgttatagtatt 6015538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 34154358 - 34154296
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaata 258  Q
    |||||| ||| ||||||||||||||||||| || |||||||| |||| | || ||||||||||    
T  34154358 agggttaataagaattctttaaatttaatttatgttgttataatatttttaaaattaaaaata 34154296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 36668671 - 36668605
Alignment:
Q  194 gaagggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||| |||||||||||| |||||||| |||  ||||||||||| |||| | || ||||||||||||    
T  36668671 gaaggatttatatgaattttttaaattcaatctatattgttataatattcttaaaattaaaaatata 36668605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 260
Target Start/End: Original strand, 50226009 - 50226155
Alignment:
Q  129 tttgggggattaatttttcttcataa-----aactcttctcacttggaa-aactaaaaaattgtatttgagga---------agggtttatatgaattct 213  Q
    |||||||| |||| ||||||||||||     ||| ||||||| |||||| ||||||||||||||||| |||||         ||||||||||||||||||    
T  50226009 tttggggggttaacttttcttcataatattaaacccttctcatttggaagaactaaaaaattgtattggaggagcgtttttgagggtttatatgaattct 50226108  T
Q  214 ttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    |  ||||||||  || |||||||| |||| | || ||||||||||||    
T  50226109 tctaatttaatctatgttgttatattatttttaaaattaaaaatata 50226155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 34918763 - 34918698
Alignment:
Q  196 agggtttatatgaattctttaaa-tttaattcatattgttatagtattataaatattaaaaatata 260  Q
    |||||||||||||||| |||||| ||||||| ||||||||||| |||| | || || |||||||||    
T  34918763 agggtttatatgaattttttaaaatttaatttatattgttataatattcttaaaataaaaaatata 34918698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 46202222 - 46202259
Alignment:
Q  22 ctaagattttgtttgcgagtttggaggggaggtgaagg 59  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  46202222 ctaagattttgtttgcgagttttgaggggaggggaagg 46202259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 47742464 - 47742517
Alignment:
Q  93 aagtggaaaaaatagagaacattgagatgaaagggctttgggggattaattttt 146  Q
    |||||||| |||||||| ||||||||| |  ||||||||||||| |||||||||    
T  47742464 aagtggaagaaatagaggacattgagaagggagggctttggggggttaattttt 47742517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 33324684 - 33324748
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||||| |||||||||  || |||||||| |||| | || ||||||| ||||    
T  33324684 agggtttatatgaattcttcaaatttaatcaatgttgttatattatttttaaaattaaaattata 33324748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 180 - 260
Target Start/End: Original strand, 36325761 - 36325840
Alignment:
Q  180 aaattgtatttgaggaagggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    |||||||||| ||||| |||||||||||||||||| ||||| |||  || |||||| | |||||| || ||||||| ||||    
T  36325761 aaattgtattggagga-gggtttatatgaattcttcaaattcaatctatgttgttaaaatattattaaaattaaaattata 36325840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 37955243 - 37955303
Alignment:
Q  200 tttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    |||||||||||||||||||||||||  || ||| |||| |||| | || ||||||||||||    
T  37955243 tttatatgaattctttaaatttaatcgatgttgatataatatttttaaaattaaaaatata 37955303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 260
Target Start/End: Original strand, 17818325 - 17818411
Alignment:
Q  173 aactaaaaaattgtatttgaggaagggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||| ||||| ||||||| |||||||||| |||||||||  || ||||||||||||| | || ||||||||||||    
T  17818325 aactaaaaaattgtattggagga-gggtttagatgaattcttcaaatttaatctatgttgttatagtatttttaaaattaaaaatata 17818411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 260
Target Start/End: Complemental strand, 35264934 - 35264848
Alignment:
Q  173 aactaaaaaattgtatttgaggaagggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||| ||||| ||||||||||||||| || |||||||||| || |||||||| |||| | || ||||||||||||    
T  35264934 aactaaaaaattgtattggagga-gggtttatatgaatttttcaaatttaatttatgttgttataatatttttaaaattaaaaatata 35264848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 43741401 - 43741462
Alignment:
Q  199 gtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||| ||||||||||||||||||  || || ||||| |||||| |||||||||||||||    
T  43741401 gtttatacgaattctttaaatttaatctatgtttttataatattattaatattaaaaatata 43741462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 1277999 - 1278063
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||||| |||||||||  || |||||||| |||| | || ||||||||||||    
T  1277999 agggtttatatgaattcttcaaatttaatatatgttgttataatattcttaaaattaaaaatata 1278063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 13044208 - 13044272
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||||| |||||||||  || |||||||| |||| | || ||||||||||||    
T  13044208 agggtttatatgaattcttcaaatttaatatatgttgttatattatttttaaaattaaaaatata 13044272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 23551705 - 23551769
Alignment:
Q  194 gaagggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaata 258  Q
    ||||||||||||||||||||||||||||| |  || |||||||| |||| |  ||||||||||||    
T  23551705 gaagggtttatatgaattctttaaatttattctatgttgttataatattcttcatattaaaaata 23551769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 33187867 - 33187803
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||||| |||| ||||  ||||||||||| |||| | || ||||||||||||    
T  33187867 agggtttatatgaattcttcaaatataatatatattgttataatattcttaaaattaaaaatata 33187803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 38505364 - 38505300
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||||| |||||||||  || |||||||| |||| | || ||||||||||||    
T  38505364 agggtttatatgaattcttcaaatttaatctatgttgttataatatttttaaaattaaaaatata 38505300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 260
Target Start/End: Complemental strand, 44487379 - 44487291
Alignment:
Q  173 aactaaaaaattgtatttgaggaa-gggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||| |||||  |||||||| |||||| || |||||||||  || ||||||||||||| | ||  |||||||||||    
T  44487379 aactaaaaaattgtattggaggagcgggtttatgtgaatttttcaaatttaatatatgttgttatagtattcttaaagttaaaaatata 44487291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 259
Target Start/End: Complemental strand, 12624390 - 12624331
Alignment:
Q  200 tttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatat 259  Q
    ||||||||||||||| |||||||||  ||||||||||| |||| | || |||||||||||    
T  12624390 tttatatgaattcttcaaatttaatatatattgttataatattcttaaaattaaaaatat 12624331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 64
Target Start/End: Original strand, 33871782 - 33871817
Alignment:
Q  29 tttgtttgcgagtttggaggggaggtgaagggaagg 64  Q
    ||||||||||||||||||||||||| ||||||||||    
T  33871782 tttgtttgcgagtttggaggggaggggaagggaagg 33871817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 293
Target Start/End: Original strand, 42622414 - 42622504
Alignment:
Q  198 ggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatatacggtatgaatgataagcattagtttataattct 293  Q
    ||||||||||||||||| ||| ||| ||||| |||||||| ||||   |||||||||||||      |||||| |||||||||||||||| |||||    
T  42622414 ggtttatatgaattcttcaaaattatttcatgttgttataatattcgtaatattaaaaata-----catgaatcataagcattagtttatcattct 42622504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 293
Target Start/End: Complemental strand, 42112979 - 42112887
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatatacggtatgaatgataagcattagtttataattct 293  Q
    |||||||||||||||| || ||||||| |  || |||||| | |||| | |||||||||||||     ||||||| |||||||||||||||| |||||    
T  42112979 agggtttatatgaatttttcaaatttattcaatgttgttaaaatattcttaatattaaaaata-----tatgaatcataagcattagtttatcattct 42112887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 19791709 - 19791774
Alignment:
Q  173 aactaaaaaattgtatttgaggaagggtttatatgaattctttaaatttaattcatattgttatagtatt 242  Q
    ||||||||||||||||| ||||    |||||||| ||||||| |||||||||| || |||||||| ||||    
T  19791709 aactaaaaaattgtattggagg----gtttatataaattcttcaaatttaatttatgttgttatattatt 19791774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 33872140 - 33872076
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||||| |||||||||  || |||||||| |||| |  | ||||||||||||    
T  33872140 agggtttatatgaattcttcaaatttaatctatgttgttatattattttttaaattaaaaatata 33872076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 42010208 - 42010144
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||| |||| || ||||| |||| ||||| ||||| |||||| || ||||||||||||    
T  42010208 agggtttatattaattattcaaattcaatttatattattataatattattaaaattaaaaatata 42010144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 42267027 - 42266963
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||| ||| |||||||||  || |||||||| |||| | || ||||||||||||    
T  42267027 agggtttatatgaatgcttcaaatttaatctatgttgttataatattcttaaaattaaaaatata 42266963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 43348259 - 43348195
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    |||||| |||||||||||| |||||||||  || |||||||| |||| | || ||||||||||||    
T  43348259 agggttaatatgaattcttcaaatttaatctatgttgttataatatttttaaaattaaaaatata 43348195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 199 - 293
Target Start/End: Original strand, 48935034 - 48935125
Alignment:
Q  199 gtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatatacggtatgaatgataagcattagtttataattct 293  Q
    ||||| |||||||||| |||||||||| ||||  ||||| |||| | || ||||||||||||   ||| ||| |||||||||| ||||| |||||    
T  48935034 gtttacatgaattcttaaaatttaatttatataattataatatttttaaaattaaaaatata---tattaatcataagcattaatttatcattct 48935125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 40985094 - 40985030
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    |||||||| |||||||||| |||||||||| |||| ||||||||||||| || ||||||||||||    
T  40985094 agggtttacatgaattcttcaaatttaatttatatagttatagtattattaaaattaaaaatata 40985030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 12506216 - 12506152
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||||| |||||||||  ||||||||||| |||| | || ||||||||||||    
T  12506216 agggtttatatgaattcttcaaatttaatatatattgttatattatttttaaaattaaaaatata 12506152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 194 - 293
Target Start/End: Original strand, 39193990 - 39194084
Alignment:
Q  194 gaagggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatatacggtatgaatgataagcattagtttataattct 293  Q
    ||||||||||||||||||||| ||||||| |  || |||||||| |||| | |||||||||||||     ||||||| |||| ||||||||||| |||||    
T  39193990 gaagggtttatatgaattcttcaaatttattctatgttgttataatattcttaatattaaaaata-----tatgaatcataaacattagtttatcattct 39194084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 167 - 258
Target Start/End: Original strand, 43007731 - 43007821
Alignment:
Q  167 ttggaaaactaaaaaattgtatttgaggaagggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaata 258  Q
    |||| ||||||||||||||||||  |||| ||||||||||||||| || |||||||||  || |||||||| |||| | || ||||||||||    
T  43007731 ttgggaaactaaaaaattgtattgaagga-gggtttatatgaatttttcaaatttaatctatgttgttataatattctcaaaattaaaaata 43007821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 39193863 - 39193925
Alignment:
Q  92 caagtggaaaaaatagagaacattgagatgaaagggctttgggggattaatttttcttcataa 154  Q
    ||||||||| |||||||| |||||| || |  ||||||||||||| |||||||||||||||||    
T  39193863 caagtggaagaaatagagtacattgggaggggagggctttggggggttaatttttcttcataa 39193925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 31149963 - 31150027
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||||| ||||||| |  || |||||||| |||| | |||||||||||||||    
T  31149963 agggtttatatgaattcttcaaatttattctatgttgttataatattcttaatattaaaaatata 31150027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 64
Target Start/End: Original strand, 79442 - 79477
Alignment:
Q  29 tttgtttgcgagtttggaggggaggtgaagggaagg 64  Q
    ||||||||||||||||||||||||| ||||||||||    
T  79442 tttgtttgcgagtttggaggggaggggaagggaagg 79477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 13227769 - 13227832
Alignment:
Q  194 gaagggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaat 257  Q
    |||||||||||||||||| || |||||||||| || |||||||| |||| | || |||||||||    
T  13227769 gaagggtttatatgaattattcaaatttaatttatgttgttataatatttttaaaattaaaaat 13227832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 260
Target Start/End: Original strand, 29584213 - 29584299
Alignment:
Q  173 aactaaaaaattgtatttgaggaagggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    |||||||||| |||||| | ||| |||||||||||||||||| ||| |||||  || |||||||| |||| | || ||||||||||||    
T  29584213 aactaaaaaaatgtattggggga-gggtttatatgaattcttcaaaattaatctatgttgttatattatttttaaaattaaaaatata 29584299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 32216 - 32278
Alignment:
Q  198 ggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||| |||| ||||| || |||||||| |||| | || ||||||||||||    
T  32216 ggtttatatgaattcttcaaatgtaatttatgttgttataatattcttaaaattaaaaatata 32278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 23932568 - 23932506
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaata 258  Q
    |||||| ||| ||||||||||||||||||| || |||||||| |||| | || ||||||||||    
T  23932568 agggttaataagaattctttaaatttaatttatgttgttataatatttttaaaattaaaaata 23932506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 29612050 - 29612116
Alignment:
Q  194 gaagggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    |||||||||||||||||| || ||||| |||  || |||||||| |||||| || ||||||||||||    
T  29612050 gaagggtttatatgaatttttcaaattaaatctatgttgttataatattattaaaattaaaaatata 29612116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 38404400 - 38404466
Alignment:
Q  194 gaagggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||||||| ||| |||||| |||| |||||| |||| | || || |||||||||    
T  38404400 gaagggtttatatgaattcttcaaaattaatttatatggttataatattcttaaaataaaaaatata 38404466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 41866149 - 41866083
Alignment:
Q  194 gaagggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||| ||||||| |||||||||  || |||||||| |||| | || ||||||||||||    
T  41866149 gaagggtttatataaattcttcaaatttaatctatgttgttatattatttttaaaattaaaaatata 41866083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 41455323 - 41455384
Alignment:
Q  199 gtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    |||||||||||||||| |||||||||  || |||||||| |||| | || ||||||||||||    
T  41455323 gtttatatgaattcttcaaatttaatatatgttgttataatattcttaaaattaaaaatata 41455384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 1839840 - 1839776
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||||| |||||||||  || |||||||| |||| | || |||||| |||||    
T  1839840 agggtttatatgaattcttcaaatttaatatatgttgttataatatttttaaaattaaacatata 1839776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 16424199 - 16424263
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||||| |||||||||  || | |||||| |||| | || ||||||||||||    
T  16424199 agggtttatatgaattcttcaaatttaatatatgtagttataatattcttaaaattaaaaatata 16424263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 27085345 - 27085389
Alignment:
Q  151 ataaaactcttctcacttggaaaactaaaaaattgtatttgagga 195  Q
    ||||||||||||||| ||||  ||||||||||||||||| |||||    
T  27085345 ataaaactcttctcatttggggaactaaaaaattgtattggagga 27085389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 27085409 - 27085473
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||||| |||||||||  || |||||||| |||| |  | ||||||||||||    
T  27085409 agggtttatatgaattcttcaaatttaatatatgttgttataatattttttaaattaaaaatata 27085473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 32158826 - 32158890
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    |||||||||||||||| |||||| |||||  || |||||||| |||| | || ||||||||||||    
T  32158826 agggtttatatgaattttttaaaattaatatatgttgttataatatttttaaaattaaaaatata 32158890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 34336092 - 34336152
Alignment:
Q  197 gggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaat 257  Q
    |||||||||||||||||| |||||||||  || |||||||| |||| | || |||||||||    
T  34336092 gggtttatatgaattcttcaaatttaatctattttgttatattatttttaaaattaaaaat 34336152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 287
Target Start/End: Original strand, 29623297 - 29623383
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatatacggtatgaatgataagcattagtttat 287  Q
    ||||||||||||||||||| |||||||||  || |||||||| |||| | |||||||||||||     ||||||| ||||||||||||||||    
T  29623297 agggtttatatgaattcttcaaatttaatatatgttgttataatatttttaatattaaaaata-----tatgaatcataagcattagtttat 29623383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 27922024 - 27922086
Alignment:
Q  198 ggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    |||||| |||||||||| |||||||||| || |||||||| |||| |||| ||||||||||||    
T  27922024 ggtttacatgaattcttcaaatttaatttatgttgttataatattttaaaaattaaaaatata 27922086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 260
Target Start/End: Original strand, 49183660 - 49183810
Alignment:
Q  124 agggctttgggggattaatttttcttcataaaact-----cttctcacttggaaaactaaaaaattgtatttgagga---------agggtttatatgaa 209  Q
    ||||||||||||| |||| |||||||||||| |||     || |||| ||||| ||||||||||||||||| |||||         ||||||||||||||    
T  49183660 agggctttggggggttaacttttcttcataatactaatccctcctcatttggagaactaaaaaattgtattagaggagggttttggagggtttatatgaa 49183759  T
Q  210 ttctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||| |||||||||  || |||||||| |||| | || || |||||||||    
T  49183760 ttcttcaaatttaatctatgttgttatattatttttaaaataaaaaatata 49183810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 32721145 - 32721038
Alignment:
Q  151 ataaaactcttctcacttggaaaactaaaaaattgtatttgaggaagggtttatatgaattctttaaatttaattcatattgttatagtattataaatat 250  Q
    ||||||||||  ||| |||| ||||| |||||||| ||| ||| ||||||||||||||||| || |||||||||  || |||| ||| |||| |||| ||    
T  32721145 ataaaactctcttcatttgggaaactcaaaaattgcattggag-aagggtttatatgaatttttcaaatttaatatatgttgtaataatattttaaa-at 32721048  T
Q  251 taaaaatata 260  Q
    ||||||||||    
T  32721047 taaaaatata 32721038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 40674171 - 40674232
Alignment:
Q  199 gtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||||||||||||  || |||||||| |||| | || ||||||||||||    
T  40674171 gtttatatgaattctttaaatttaatatatgttgttataatattcttaaaattaaaaatata 40674232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 19148228 - 19148292
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||| ||| |||||||||| || |||||||| |||| | || ||||||||||||    
T  19148228 agggtttatatgaatgcttcaaatttaatttatgttgttataatattcttaaaattaaaaatata 19148292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 198 - 258
Target Start/End: Original strand, 32708788 - 32708848
Alignment:
Q  198 ggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaata 258  Q
    |||||||||||||||||| |||| |||| ||||||||||| |||| | || ||||||||||    
T  32708788 ggtttatatgaattcttttaattcaatttatattgttataatattcttaaaattaaaaata 32708848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 48444566 - 48444630
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||| | |||||||||  ||||||||||| |||| | || ||||||||||||    
T  48444566 agggtttatatgaattcctcaaatttaatatatattgttataatatttttaaaattaaaaatata 48444630  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 35989165 - 35989231
Alignment:
Q  194 gaagggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||| ||||||||||||||| |||||||||  ||||||||||| |||| | || || |||||||||    
T  35989165 gaaggatttatatgaattcttcaaatttaatctatattgttatattatttttaaaataaaaaatata 35989231  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 3707032 - 3707099
Alignment:
Q  86 aaggaacaagtggaaaaaatagagaacattgagatgaaagggctttgggggattaatttttcttcataa 154  Q
    ||||| ||||||||| |||||||  ||||||||| || | ||||||||||| || ||||||||||||||    
T  3707032 aaggagcaagtggaagaaatagatgacattgagaggagaaggctttggggg-ttcatttttcttcataa 3707099  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 35283148 - 35283212
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||||| | |||||||  || |||||||| |||| | || ||||||||||||    
T  35283148 agggtttatatgaattcttcatatttaatatatgttgttataatattcttaaaattaaaaatata 35283212  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 46175289 - 46175233
Alignment:
Q  200 tttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaa 256  Q
    |||||||||||||||||||||||||  || ||||||||| ||| | || ||||||||    
T  46175289 tttatatgaattctttaaatttaatctatgttgttatagaattcttaaaattaaaaa 46175233  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 53888548 - 53888612
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||||| |||||||||  || |||| ||| |||| | || ||||||||||||    
T  53888548 agggtttatatgaattcttcaaatttaatatatgttgtaataatattcttaaaattaaaaatata 53888612  T

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Target: scaffold0648 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 199 - 259
Target Start/End: Complemental strand, 7457 - 7397
Alignment:
Q  199 gtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatat 259  Q
    ||||||||||||||||||||||||||   |||||||||| |||| | || |||||||||||    
T  7457 gtttatatgaattctttaaatttaatatttattgttataatatttttaaaattaaaaatat 7397  T

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Target: scaffold0119 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 37182 - 37246
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||||| |||||||||  || |||||||| |||| | || ||||||||||||    
T  37182 agggtttatatgaattcttcaaatttaatatatgttgttatattatttttaaaattaaaaatata 37246  T

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Target: scaffold0119; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 30515 - 30578
Alignment:
Q  196 agggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||||| |||||||| | || |||||||| |||| | || ||||||||||||    
T  30515 agggtttatatgaattcttcaaatttaaat-atgttgttatattatttttaaaattaaaaatata 30578  T

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Target: scaffold0263 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 198 - 260
Target Start/End: Complemental strand, 12277 - 12215
Alignment:
Q  198 ggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatata 260  Q
    ||||||||||||||||| |||||||||  || |||||||| |||| | || ||||||||||||    
T  12277 ggtttatatgaattcttcaaatttaatctatgttgttataatatttttaaaattaaaaatata 12215  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 90903 - 90842
Alignment:
Q  198 ggtttatatgaattctttaaatttaattcatattgttatagtattataaatattaaaaatat 259  Q
    ||||||||||||||||| |||||||||  || |||||||| |||| | || |||||||||||    
T  90903 ggtttatatgaattcttcaaatttaatctatgttgttataatatttttaaaattaaaaatat 90842  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 82722 - 82790
Alignment:
Q  86 aaggaacaagtggaaaaaatagagaacattgagatgaaagggctttgggggattaatttttcttcataa 154  Q
    ||||| ||||||||| |||||||  || ||||||  |||||||||| |||| || ||||||||||||||    
T  82722 aaggagcaagtggaagaaatagatgactttgagagaaaagggctttcgggggtttatttttcttcataa 82790  T

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