View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14334_low_21 (Length: 280)

Name: NF14334_low_21
Description: NF14334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14334_low_21
NF14334_low_21
[»] chr7 (11 HSPs)
chr7 (15-264)||(4264096-4264345)
chr7 (104-249)||(4315274-4315421)
chr7 (15-95)||(4305943-4306022)
chr7 (156-212)||(5554913-5554969)
chr7 (156-212)||(29126747-29126803)
chr7 (157-212)||(19323375-19323430)
chr7 (165-212)||(40858916-40858963)
chr7 (158-212)||(17194763-17194817)
chr7 (42-143)||(33445816-33445917)
chr7 (156-212)||(38141393-38141449)
chr7 (156-212)||(41768462-41768518)
[»] chr8 (2 HSPs)
chr8 (15-83)||(7114455-7114523)
chr8 (158-210)||(13090673-13090725)
[»] chr4 (5 HSPs)
chr4 (158-212)||(23108660-23108714)
chr4 (158-210)||(37871545-37871597)
chr4 (158-212)||(36652577-36652631)
chr4 (156-212)||(40346606-40346662)
chr4 (164-212)||(47591349-47591397)
[»] chr1 (2 HSPs)
chr1 (105-174)||(34636558-34636628)
chr1 (164-212)||(26676057-26676105)
[»] chr3 (1 HSPs)
chr3 (104-191)||(16004053-16004144)
[»] chr5 (3 HSPs)
chr5 (161-212)||(26369829-26369880)
chr5 (156-210)||(22581288-22581342)
chr5 (158-212)||(40974162-40974216)
[»] chr6 (3 HSPs)
chr6 (45-150)||(17213034-17213139)
chr6 (156-212)||(7093076-7093132)
chr6 (158-210)||(12913146-12913198)


Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 264
Target Start/End: Complemental strand, 4264345 - 4264096
Alignment:
Q  15 aatataattagtgttagtcatgatgttggtgtgggagtaggaaggtgggttgatgataactcaaggtgtaagttaggagacagcgtttcaactttatttt 114  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||    
T  4264345 aatataattagtgttagtcatgatgttggtgttggagtaggaaggtgggttgatgataacttaaggtgtaagttaggagacagagcttcaactttatttt 4264246  T
Q  115 ggtgggatctttggttagacataggggttgtaaaggatagatt-agtcgtctttttgatctttctaataataatatggtaacggcggctgaaatgtatta 213  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||| |||||||||| || |    
T  4264245 ggtgggatctttggttagacagaggggttgtaaaggatagattcagtcgtcttatttatctttctaataataatatggtaacggtggctgaaatgaatga 4264146  T
Q  214 gttaagttgggcgagggtggtgaggcttggagatggtggggggaggttgtg 264  Q
    |||| |||||| ||||||||||||||||||||||||| |||||||||||||    
T  4264145 gttaggttgggtgagggtggtgaggcttggagatggt-gggggaggttgtg 4264096  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 249
Target Start/End: Original strand, 4315274 - 4315421
Alignment:
Q  104 aactttattttggtgggatctttggttagacataggggttgtaaaggatagatt-agtcgtctttttgatctttctaataataatatggtaacggcggct 202  Q
    |||||||||||||||||||| ||||||| | | | ||||| ||||| ||||||| |||||||||||| | | |||| |||||||||||||||||| ||||    
T  4315274 aactttattttggtgggatccttggttaaagagatgggttttaaagtatagattcagtcgtcttttttaaccttctgataataatatggtaacggtggct 4315373  T
Q  203 gaaatgtattagttaag-ttgggcgagggtggtgaggcttggagatgg 249  Q
    |||||| || ||||| | ||||| ||||||||||| | ||||||||||    
T  4315374 gaaatgaatcagttaggtttgggtgagggtggtgatgtttggagatgg 4315421  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 4305943 - 4306022
Alignment:
Q  15 aatataattagtgttagtcatgatgttggtgtgggagtaggaaggtgggttgatgataactcaaggtgtaagttaggagac 95  Q
    ||||||| |||||||||||||| ||||||||||||||| | || || | ||||| |||||| ||||| | |||||||||||    
T  4305943 aatataactagtgttagtcatggtgttggtgtgggagttgaaaagt-gattgatcataacttaaggtatgagttaggagac 4306022  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 5554913 - 5554969
Alignment:
Q  156 ttagtcgtctttttgatctttctaataataatatggtaacggcggctgaaatgtatt 212  Q
    ||||||| |||||||||||| ||| |||||| |||| ||||| ||||||||||||||    
T  5554913 ttagtcgcctttttgatcttgctactaataaaatggcaacggtggctgaaatgtatt 5554969  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 29126803 - 29126747
Alignment:
Q  156 ttagtcgtctttttgatctttctaataataatatggtaacggcggctgaaatgtatt 212  Q
    ||||||| |||||||||||| ||| |||||| |||| ||||| ||||||||||||||    
T  29126803 ttagtcgcctttttgatcttgctactaataaaatggcaacggtggctgaaatgtatt 29126747  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 19323375 - 19323430
Alignment:
Q  157 tagtcgtctttttgatctttctaataataatatggtaacggcggctgaaatgtatt 212  Q
    |||||| |||||||||||| ||| |||||| |||| ||||| ||||||||||||||    
T  19323375 tagtcgcctttttgatcttgctactaataaaatggcaacggtggctgaaatgtatt 19323430  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 40858963 - 40858916
Alignment:
Q  165 tttttgatctttctaataataatatggtaacggcggctgaaatgtatt 212  Q
    ||||||||||| |||||||||| |||| ||||| ||||||||||||||    
T  40858963 tttttgatcttgctaataataaaatggcaacggtggctgaaatgtatt 40858916  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 17194817 - 17194763
Alignment:
Q  158 agtcgtctttttgatctttctaataataatatggtaacggcggctgaaatgtatt 212  Q
    ||||| |||||||||||| ||| |||||| |||| ||||| ||||||||||||||    
T  17194817 agtcgcctttttgatcttgctactaataaaatggcaacggtggctgaaatgtatt 17194763  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 143
Target Start/End: Complemental strand, 33445917 - 33445816
Alignment:
Q  42 ggtgtgggagtaggaaggtgggttgatgataactcaaggtgtaagttaggagacagcgtttcaactttattttggtgggatctttggttagacatagggg 141  Q
    |||||||| ||||||| |||| ||||||| ||||   ||||| || |  |||||   |||||||| ||||||| |||||||| |||||||||||| ||||    
T  33445917 ggtgtgggggtaggaaagtggtttgatgacaactgtgggtgtgaggtgtgagacgcagtttcaacattatttttgtgggatcattggttagacatggggg 33445818  T
Q  142 tt 143  Q
    ||    
T  33445817 tt 33445816  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 38141393 - 38141449
Alignment:
Q  156 ttagtcgtctttttgatctttctaataataatatggtaacggcggctgaaatgtatt 212  Q
    ||||||| | |||||||||| ||| |||||| |||| ||||| ||||||||||||||    
T  38141393 ttagtcgcccttttgatcttgctactaataaaatggcaacggtggctgaaatgtatt 38141449  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 41768518 - 41768462
Alignment:
Q  156 ttagtcgtctttttgatctttctaataataatatggtaacggcggctgaaatgtatt 212  Q
    |||||||||||||| ||||| ||| ||| || |||| ||||| ||||||||||||||    
T  41768518 ttagtcgtcttttttatcttgctactaacaaaatggcaacggtggctgaaatgtatt 41768462  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 7114523 - 7114455
Alignment:
Q  15 aatataattagtgttagtcatgatgttggtgtgggagtaggaaggtgggttgatgataactcaaggtgt 83  Q
    |||||||||||| |||| |||| ||| || |||||||||||||||||| |||| ||||||| |||||||    
T  7114523 aatataattagtattagacatggtgtaggcgtgggagtaggaaggtggattgacgataacttaaggtgt 7114455  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 13090725 - 13090673
Alignment:
Q  158 agtcgtctttttgatctttctaataataatatggtaacggcggctgaaatgta 210  Q
    |||||||||||||||||  ||| |||||| |||| ||||| ||||||||||||    
T  13090725 agtcgtctttttgatctagctactaataaaatggcaacggtggctgaaatgta 13090673  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 23108714 - 23108660
Alignment:
Q  158 agtcgtctttttgatctttctaataataatatggtaacggcggctgaaatgtatt 212  Q
    |||||||||||||||||| ||| |||||| |||||||| | ||||||||||||||    
T  23108714 agtcgtctttttgatcttgctattaataaaatggtaacagtggctgaaatgtatt 23108660  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 37871597 - 37871545
Alignment:
Q  158 agtcgtctttttgatctttctaataataatatggtaacggcggctgaaatgta 210  Q
    |||||||||||||||||  ||| |||||| |||||||||| ||||||||||||    
T  37871597 agtcgtctttttgatctagctactaataaaatggtaacggtggctgaaatgta 37871545  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 36652631 - 36652577
Alignment:
Q  158 agtcgtctttttgatctttctaataataatatggtaacggcggctgaaatgtatt 212  Q
    ||||| |||||||||||| ||| ||||||  ||||||||| ||||||||||||||    
T  36652631 agtcgcctttttgatcttgctactaataaattggtaacggtggctgaaatgtatt 36652577  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 40346662 - 40346606
Alignment:
Q  156 ttagtcgtctttttgatctttctaataataatatggtaacggcggctgaaatgtatt 212  Q
    ||||||| |||||||||||| ||| |||||| |||| ||||| || |||||||||||    
T  40346662 ttagtcgcctttttgatcttgctactaataaaatggcaacggtggttgaaatgtatt 40346606  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 47591397 - 47591349
Alignment:
Q  164 ctttttgatctttctaataataatatggtaacggcggctgaaatgtatt 212  Q
    |||||||||||| |||||||||| |||| ||||| ||||||| ||||||    
T  47591397 ctttttgatcttgctaataataaaatggcaacggtggctgaattgtatt 47591349  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 34636628 - 34636558
Alignment:
Q  105 actttattttggtgggatctttggttagacataggggttgtaaaggatagat-tagtcgtctttttgatct 174  Q
    ||||||||||||||||||||||||||| |  |||||||| | |||  ||||| ||||||||||||||||||    
T  34636628 actttattttggtgggatctttggttaaaagtaggggttttgaagtttagatatagtcgtctttttgatct 34636558  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 26676057 - 26676105
Alignment:
Q  164 ctttttgatctttctaataataatatggtaacggcggctgaaatgtatt 212  Q
    |||||||||||| |||||||||| |||| ||||| ||||||||||||||    
T  26676057 ctttttgatcttgctaataataaaatggcaacggtggctgaaatgtatt 26676105  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 191
Target Start/End: Original strand, 16004053 - 16004144
Alignment:
Q  104 aactttattttggtgggat-ctttggttagacataggggttgtaaaggatagatt-agtcgtc--tttttgatctttctaataataatatgg 191  Q
    ||||||||||||||||||| ||||||||||||  |||| || | ||||||||||| |||||||  ||||| ||||||| |||||||| ||||    
T  16004053 aactttattttggtgggatcctttggttagacggagggattttgaaggatagattaagtcgtcttttttttatctttcaaataataaaatgg 16004144  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 26369880 - 26369829
Alignment:
Q  161 cgtctttttgatctttctaataataatatggtaacggcggctgaaatgtatt 212  Q
    ||||||||||||||| ||| |||||| |||| ||||| ||||||||||||||    
T  26369880 cgtctttttgatcttgctattaataaaatggcaacggtggctgaaatgtatt 26369829  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 22581342 - 22581288
Alignment:
Q  156 ttagtcgtctttttgatctttctaataataatatggtaacggcggctgaaatgta 210  Q
    |||||||||||||||| ||| ||| |||||| |||||||| | ||||||||||||    
T  22581342 ttagtcgtctttttgaacttgctactaataaaatggtaacagtggctgaaatgta 22581288  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 40974216 - 40974162
Alignment:
Q  158 agtcgtctttttgatctttctaataataatatggtaacggcggctgaaatgtatt 212  Q
    ||||| |||||||||||| ||| |||||| |||| ||||| ||||||||||||||    
T  40974216 agtcgcctttttgatcttgctactaataaaatggcaacggtggctgaaatgtatt 40974162  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 17213139 - 17213034
Alignment:
Q  45 gtgggagtaggaaggtgggttgatgataactcaaggtgtaagttaggagacagcgtttcaactttattttggtgggatctttggttagacataggggttg 144  Q
    ||||| ||| ||| |||| |||||||||||| | ||||| ||||||||||  | |  ||||  |||||||||||||||  ||||||||||| || ||||     
T  17213139 gtgggtgtaagaatgtggattgatgataacttacggtgtgagttaggagatggagcatcaatattattttggtgggattcttggttagacaaagaggttt 17213040  T
Q  145 taaagg 150  Q
    ||||||    
T  17213039 taaagg 17213034  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 7093076 - 7093132
Alignment:
Q  156 ttagtcgtctttttgatctttctaataataatatggtaacggcggctgaaatgtatt 212  Q
    ||||||| |||||||||||| ||| |||||| |||| ||||| |||||| |||||||    
T  7093076 ttagtcgcctttttgatcttgctactaataaaatggcaacggtggctgatatgtatt 7093132  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 12913198 - 12913146
Alignment:
Q  158 agtcgtctttttgatctttctaataataatatggtaacggcggctgaaatgta 210  Q
    |||||||||||||||||  ||| |||||| |||| ||||| ||||||||||||    
T  12913198 agtcgtctttttgatctagctactaataaaatggcaacggtggctgaaatgta 12913146  T

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