View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14334_low_23 (Length: 269)
Name: NF14334_low_23
Description: NF14334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14334_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 11 - 198
Target Start/End: Complemental strand, 10234737 - 10234550
Alignment:
| Q |
11 |
cacagatcaaaaagatttgtggaagctgtcagttcgagtcaaagataaatggacagtagtgaaggatggaaaagaacatttggaattgttgattgttgat |
110 |
Q |
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| T |
10234737 |
cacagatcaaaaagatttgtggaagctgtcagttcgagtcaaagataaatggacagtagtgaaggatggaaaagaacatttggaattgctgattgttgat |
10234638 |
T |
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| Q |
111 |
gctaaggtatgggagataacatttgaacataataccctactgctattttctggtcaccgattggttttacttttgtttatgaaaacaa |
198 |
Q |
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| T |
10234637 |
gctaaggtatgggagataacatttgaacataataccctactgctattttctggtcactgattggttttacttttgtttatgaaaacaa |
10234550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 11 - 199
Target Start/End: Complemental strand, 8337459 - 8337271
Alignment:
| Q |
11 |
cacagatcaaaaagatttgtggaagctgtcagttcgagtcaaagataaatggacagtagtgaaggatggaaaagaacatttggaattgttgattgttgat |
110 |
Q |
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| T |
8337459 |
cacagataaaaaagatttgtggaagctgtcagttcgagtcaaagataaatggacagcagtgaaggatggaaaagaacatttggaattgctgattgttgat |
8337360 |
T |
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| Q |
111 |
gctaaggtatgggagataacatttgaacataataccctactgctattttctggtcaccgattggttttacttttgtttatgaaaacaaa |
199 |
Q |
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| T |
8337359 |
gctaaggtatgggacataacatttgaacataataccctactgctattttttggtcactcattggttttacttttgtttatgaaaacaaa |
8337271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 118
Target Start/End: Original strand, 28729012 - 28729082
Alignment:
| Q |
48 |
gtcaaagataaatggacagtagtgaaggatggaaaagaacatttggaattgttgattgttgatgctaaggt |
118 |
Q |
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| T |
28729012 |
gtcaaggataaatggactgttgtgaaagatggcaaggaacatttggagctggtgattgttgatgataaggt |
28729082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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