View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14334_low_29 (Length: 252)
Name: NF14334_low_29
Description: NF14334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14334_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 40235836 - 40235622
Alignment:
| Q |
18 |
caaagggtattgaaatattttatcctaagggatcatagaggaacagattggcatgtcaaagcacgttctattggtcgcaagctttattttgatgatggtt |
117 |
Q |
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| T |
40235836 |
caaagggtattgaaatattttatcctaagggatcatagaggaacagattggcatgtcaaagcacgttctattggtcgcaagctttattttgatgatggtt |
40235737 |
T |
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| Q |
118 |
ggaaactattcagagaagaaaattctttaaaggacaatgacttccttgtttttcagacatattgaaaacaatgtattcaagttcaaaatttatgaactat |
217 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40235736 |
ggaaactattcagagaagaaaattctttagaggacaatgacttccttg-ttttcagacatattgaaaacaatgtattcaagttcaaaatttatgaactat |
40235638 |
T |
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| Q |
218 |
catcaatgtgtaaaaa |
233 |
Q |
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|||||||||||||||| |
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| T |
40235637 |
catcaatgtgtaaaaa |
40235622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 17460793 - 17461007
Alignment:
| Q |
18 |
caaagggtattgaaatattttatcctaagggatcatagaggaacagattggcatgtcaaagcacgttctattggtcgcaagctttattttgatgatggtt |
117 |
Q |
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|||||| ||||||| ||||||||||||| ||||||||||||| |||||||||||||||| |||||||||| ||| ||||||||||||||||||| |
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| T |
17460793 |
caaaggctattgaaggattttatcctaagagatcatagaggaagtgattggcatgtcaaagtgtgttctattggcaacaaactttattttgatgatggtt |
17460892 |
T |
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| Q |
118 |
ggaaactattcagagaagaaaattctttaaaggacaatgacttccttgtttttcagacatattgaaaacaatgtattcaagttcaaaatttatgaactat |
217 |
Q |
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| T |
17460893 |
ggaaactattcagagaagaaaattctttagaggacaatgacttccttg-ttttcacgcatattgaaaacaatgtattcaagttcaaaatccttgaactat |
17460991 |
T |
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| Q |
218 |
catcaatgtgtaaaaa |
233 |
Q |
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||||||||||| |||| |
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| T |
17460992 |
catcaatgtgtcaaaa |
17461007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 34 - 233
Target Start/End: Original strand, 17454592 - 17454790
Alignment:
| Q |
34 |
attttatcctaagggatcatagaggaacagattggcatgtcaaagcacgttctattggtcgcaagctttattttgatgatggttggaaactattcagaga |
133 |
Q |
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||||||||||||| |||| |||| ||| ||||||| |||||||||| ||| ||||||| | || | |||||||||||||| ||||| ||| ||| | |
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| T |
17454592 |
attttatcctaagagatcgtagaagaagagattggtatgtcaaagcgcgtcgtattggtgacgagttctattttgatgatggctggaagaaatttagaca |
17454691 |
T |
|
| Q |
134 |
agaaaattctttaaaggacaatgacttccttgtttttcagacatattgaaaacaatgtattcaagttcaaaatttatgaactatcatcaatgtgtaaaaa |
233 |
Q |
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|||||||| |||| ||| |||||||||||||||||| | ||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||| |
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| T |
17454692 |
agaaaattgtttagtggagaatgacttccttgttttt-actcatattgaaaacaatgtattcaaattcaaaattcttgaactatcatcaatgtgtgaaaa |
17454790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 233
Target Start/End: Complemental strand, 17394237 - 17394039
Alignment:
| Q |
34 |
attttatcctaagggatcatagaggaacagattggcatgtcaaagcacgttctattggtcgcaagctttattttgatgatggttggaaactattcagaga |
133 |
Q |
| |
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||||||||||||| |||| |||||||| |||||||||||||||||| ||| |||||| ||||||||||||| | ||| ||||| | ||| ||||| |
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| T |
17394237 |
attttatcctaagagatcgtagaggaagagattggcatgtcaaagctcgtcttattggcgatgagctttattttgacggtggctggaagcaatttagaga |
17394138 |
T |
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| Q |
134 |
agaaaattctttaaaggacaatgacttccttgtttttcagacatattgaaaacaatgtattcaagttcaaaatttatgaactatcatcaatgtgtaaaaa |
233 |
Q |
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|||||||||||| |||| |||| |||||||||||| | |||||||||||| | ||||||| |||||||||| |||||||||||| |||||| |||| |
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| T |
17394137 |
ggaaaattctttagaggaggatgatttccttgttttt-acacatattgaaaataccgtattcaggttcaaaattcttgaactatcatcgatgtgtgaaaa |
17394039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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