View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14334_low_3 (Length: 612)
Name: NF14334_low_3
Description: NF14334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14334_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 1 - 578
Target Start/End: Original strand, 420713 - 421290
Alignment:
| Q |
1 |
ttgaatatttagggagaaagtgaatgcactaacctttcactgccaaaggataggctgagaaaagcacaaagagaagcttctatggcttcaaagttttgag |
100 |
Q |
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| T |
420713 |
ttgaatatttagggagaaagtgaatgcactaacctttcactgccaaaggataggctgagaaaagcacaaagagaagcttctatggcttcaaagttttgag |
420812 |
T |
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| Q |
101 |
aatgaagcatggaaacaagaggaaccataactccactttctgccaaattatgcttttgcttattggacaatctactaagtttcattgctgcttgaatttg |
200 |
Q |
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| T |
420813 |
aatgaagcatggaaacaagaggaaccataactccactttctgccaaattatgcttttgcttattggacaatctactaagtttcattgctgcttgaatttg |
420912 |
T |
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| Q |
201 |
agcttcactatcaccattccaaagattttccacaatctctttctccattgaagctatttctatctagtttcttctttgttagggaatagtaattgttgca |
300 |
Q |
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| T |
420913 |
agcttcactatcaccattccaaagattttccacaatctctttctccattgaagctatttctatctagtttcttctttgttagggaatagtaattgttgca |
421012 |
T |
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| Q |
301 |
ttgagattggttgcttgaagaggtaactttgagattttgagggtattccaatccattgtttcaactagaagcaacatacaattctttttatcacctttat |
400 |
Q |
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| T |
421013 |
ttgagattggttgcttgaagaggtaactttgagattttgagggtattccaatccattgtttcaactagaagcaacatacaattctttttatcacctttat |
421112 |
T |
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| Q |
401 |
tacctctttggtgtgtgatttggtannnnnnnaatatattctcacaaaacaatattgattcctaagaatgaatctttaaatttctttatatagaagcaaa |
500 |
Q |
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| T |
421113 |
tacctctttggtgtgtgatttggtatttttttaatatattctcacaaaacaatattgattcctaagaatgaatctttaaatttctttatatagaagcaaa |
421212 |
T |
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| Q |
501 |
cactatcagcttttgttggccgcaattttctgctttaatgttaggttagctgatagtgtacgagcttgaaaataatag |
578 |
Q |
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| T |
421213 |
cactatcagcttttgttggccgcaattttctgctttaatgttaggttagctgatagtgtacgagcttgaaaataatag |
421290 |
T |
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