View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14334_low_31 (Length: 238)
Name: NF14334_low_31
Description: NF14334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14334_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 9027080 - 9026877
Alignment:
| Q |
15 |
agcaaaggaataattaggcatagagcaagtagaattagtattgacaacattgttacattcaatgtttgaaatgatagactattgagaaagaagaagagga |
114 |
Q |
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| T |
9027080 |
agcaaaggaagaattaggcatagagcaagtagaattagtattgacaacattgttacattcaatgtttgaaatgatagactattgagaaagaagaagagga |
9026981 |
T |
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| Q |
115 |
tgctttagatgtacttacaactttagaataataacttggttctggttaaaagttattatatataacaagagagaacaaccattttaatttttgactaaaa |
214 |
Q |
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| T |
9026980 |
tgctttagatgtacttacaactttagaataataacttggttctggttaaaagttattatatataacaagagagaacaaccattttaatttttgactaaaa |
9026881 |
T |
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| Q |
215 |
ctac |
218 |
Q |
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|||| |
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| T |
9026880 |
ctac |
9026877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 9002783 - 9002837
Alignment:
| Q |
15 |
agcaaaggaataattaggcatagagcaagtagaattagtattgacaacattgtta |
69 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
9002783 |
agcaaaggaataattaggcatagagcaagtagaaatagtactgacaacattgtta |
9002837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 141
Target Start/End: Original strand, 9002862 - 9002901
Alignment:
| Q |
102 |
aagaagaagaggatgctttagatgtacttacaactttaga |
141 |
Q |
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|||||||||||||| |||||||||||||| |||||||||| |
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| T |
9002862 |
aagaagaagaggattctttagatgtactttcaactttaga |
9002901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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