View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14334_low_33 (Length: 214)
Name: NF14334_low_33
Description: NF14334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14334_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 36911626 - 36911728
Alignment:
| Q |
89 |
ctaaaacatatttgatttgacaatcagttagtctatcacgtgacctctttatctagctgatggtctccaactttaaagccaaattgtaatatacttattt |
188 |
Q |
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| T |
36911626 |
ctaaaacatgtttgatttgacaatcatttggtctatcgcatgacctcttcatctagctgatggtctccaattttaaagccaaattgt--tatacttattt |
36911723 |
T |
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| Q |
189 |
agcta |
193 |
Q |
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||||| |
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| T |
36911724 |
agcta |
36911728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 36641482 - 36641427
Alignment:
| Q |
135 |
ctttatctagctgatggtctccaactttaaagccaaattgtaatatacttatttag |
190 |
Q |
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| T |
36641482 |
ctttatctaactggtagtctccaattttaaagccaaattgtaatatacttatttag |
36641427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 194
Target Start/End: Complemental strand, 36634145 - 36634102
Alignment:
| Q |
151 |
gtctccaactttaaagccaaattgtaatatacttatttagctat |
194 |
Q |
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| T |
36634145 |
gtctccaattttaaagccaaattgtaatatacttatttaactat |
36634102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 35970174 - 35970226
Alignment:
| Q |
139 |
atctagctgatggtctccaactttaaagccaaattgtaatatacttatttagc |
191 |
Q |
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| T |
35970174 |
atctagctgatagtctccaattttgaagccatattgtgatatacttatttagc |
35970226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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