View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14334_low_34 (Length: 207)

Name: NF14334_low_34
Description: NF14334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14334_low_34
NF14334_low_34
[»] chr8 (13 HSPs)
chr8 (1-191)||(30151062-30151249)
chr8 (119-156)||(26771345-26771382)
chr8 (119-156)||(28763448-28763485)
chr8 (65-103)||(30151037-30151075)
chr8 (111-153)||(32840942-32840984)
chr8 (119-156)||(1058030-1058067)
chr8 (111-148)||(2487970-2488007)
chr8 (119-156)||(6882007-6882044)
chr8 (119-156)||(27754483-27754520)
chr8 (119-156)||(38648431-38648468)
chr8 (119-156)||(43717887-43717924)
chr8 (111-155)||(18133728-18133772)
chr8 (124-156)||(36963307-36963339)
[»] chr3 (6 HSPs)
chr3 (110-189)||(42320245-42320323)
chr3 (119-156)||(31365141-31365178)
chr3 (111-156)||(37389255-37389300)
chr3 (119-157)||(20257616-20257654)
chr3 (119-156)||(21367747-21367784)
chr3 (119-156)||(43046745-43046782)
[»] chr1 (9 HSPs)
chr1 (111-154)||(3233970-3234013)
chr1 (119-157)||(36514628-36514666)
chr1 (119-156)||(2295176-2295213)
chr1 (111-156)||(2777963-2778008)
chr1 (119-156)||(38001675-38001712)
chr1 (111-156)||(50644208-50644253)
chr1 (121-156)||(33204347-33204382)
chr1 (119-156)||(9572054-9572091)
chr1 (119-156)||(49938827-49938864)
[»] chr7 (6 HSPs)
chr7 (111-156)||(4970745-4970790)
chr7 (112-156)||(44989630-44989674)
chr7 (121-156)||(18765366-18765401)
chr7 (109-156)||(18962536-18962583)
chr7 (119-156)||(19214359-19214396)
chr7 (111-156)||(33678852-33678897)
[»] chr2 (8 HSPs)
chr2 (119-156)||(30331831-30331868)
chr2 (122-156)||(24101011-24101045)
chr2 (119-156)||(1633453-1633490)
chr2 (119-156)||(2142734-2142771)
chr2 (111-156)||(27317451-27317496)
chr2 (119-156)||(36534848-36534885)
chr2 (111-155)||(4606997-4607041)
chr2 (111-155)||(16451190-16451234)
[»] chr6 (5 HSPs)
chr6 (112-156)||(10645338-10645382)
chr6 (119-156)||(2455068-2455105)
chr6 (111-156)||(20368134-20368179)
chr6 (119-156)||(31813241-31813278)
chr6 (112-156)||(836491-836535)
[»] chr5 (8 HSPs)
chr5 (119-153)||(16457935-16457969)
chr5 (119-159)||(1773056-1773094)
chr5 (123-156)||(12425657-12425690)
chr5 (119-156)||(15015923-15015960)
chr5 (123-156)||(39248182-39248215)
chr5 (119-152)||(41981660-41981693)
chr5 (119-155)||(3520657-3520693)
chr5 (116-156)||(5721178-5721218)
[»] chr4 (5 HSPs)
chr4 (111-149)||(45622312-45622350)
chr4 (110-156)||(49940120-49940166)
chr4 (119-156)||(21731609-21731646)
chr4 (119-156)||(40174637-40174674)
chr4 (119-155)||(39603124-39603160)


Alignment Details
Target: chr8 (Bit Score: 173; Significance: 3e-93; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 30151062 - 30151249
Alignment:
Q  1 ccacttatttataagcttacataagctattttctatagtagtataagataaaataaagttaacatgttcaagcgcttatcatgataagctcacttattga 100  Q
    |||||||||||||||||| ||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30151062 ccacttatttataagcttgcataagctattttctatagt---ataagataaaataaagttaacatgttcaagcgcttatcatgataagctcacttattga 30151158  T
Q  101 taaaataaattaagttgatttcataagttctccctaacagtctcacaaaacttatggaaagcttaaataagccaatcatagcaggccctat 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30151159 taaaataaattaagttgatttcataagttctccctaacagtctcacaaaacttatggaaagcttaaataagccaatcatagcaggccctat 30151249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 26771345 - 26771382
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaacttatg 156  Q
    |||||||||||||||| |||||||||||||||||||||    
T  26771345 tttcataagttctcccaaacagtctcacaaaacttatg 26771382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 28763448 - 28763485
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaacttatg 156  Q
    |||||||||||||||| |||||||||||||||||||||    
T  28763448 tttcataagttctcccaaacagtctcacaaaacttatg 28763485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 30151037 - 30151075
Alignment:
Q  65 tgttcaagcgcttatcatgataagctcacttattgataa 103  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  30151037 tgttcaagcgcttatcatgataagcccacttatttataa 30151075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 153
Target Start/End: Complemental strand, 32840984 - 32840942
Alignment:
Q  111 taagttgatttcataagttctccctaacagtctcacaaaactt 153  Q
    ||||||| |||||||||||||||| ||||||||| ||||||||    
T  32840984 taagttgttttcataagttctcccaaacagtctcgcaaaactt 32840942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 1058067 - 1058030
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaacttatg 156  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  1058067 tttcaaaagttctcccaaacagtctcacaaaacttatg 1058030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 2488007 - 2487970
Alignment:
Q  111 taagttgatttcataagttctccctaacagtctcacaa 148  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  2488007 taagttgttttcataagttctcccaaacagtctcacaa 2487970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 6882007 - 6882044
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaacttatg 156  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  6882007 tttcataggttctcccaaacagtctcacaaaacttatg 6882044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 27754483 - 27754520
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaacttatg 156  Q
    |||||||||||||||| || ||||||||||||||||||    
T  27754483 tttcataagttctcccaaatagtctcacaaaacttatg 27754520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 38648431 - 38648468
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaacttatg 156  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  38648431 tttcataaggtctcccaaacagtctcacaaaacttatg 38648468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 43717924 - 43717887
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaacttatg 156  Q
    |||||||||||||||| || ||||||||||||||||||    
T  43717924 tttcataagttctcccaaatagtctcacaaaacttatg 43717887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 18133728 - 18133772
Alignment:
Q  111 taagttgatttcataagttctccctaacagtctcacaaaacttat 155  Q
    |||| |||||||| ||| |||||| ||||||||||||||||||||    
T  18133728 taagctgatttcacaagctctcccaaacagtctcacaaaacttat 18133772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 36963339 - 36963307
Alignment:
Q  124 taagttctccctaacagtctcacaaaacttatg 156  Q
    ||||||||||| |||||||||||||||||||||    
T  36963339 taagttctcccaaacagtctcacaaaacttatg 36963307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 110 - 189
Target Start/End: Complemental strand, 42320323 - 42320245
Alignment:
Q  110 ttaagttgatttcataagttctccctaacagtctcacaaaacttatggaaagcttaaataagccaatcatagcaggccct 189  Q
    ||||||||||||||| | ||||||| ||||||||||||||||||||| ||| ||||| || |||||| ||| ||||||||    
T  42320323 ttaagttgatttcatgaattctcccaaacagtctcacaaaacttatgcaaa-cttaagtaggccaattataacaggccct 42320245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 31365178 - 31365141
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaacttatg 156  Q
    |||||||||||||||| |||||||||||||||||||||    
T  31365178 tttcataagttctcccaaacagtctcacaaaacttatg 31365141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 37389255 - 37389300
Alignment:
Q  111 taagttgatttcataagttctccctaacagtctcacaaaacttatg 156  Q
    ||||||| |||||||||||||||| || ||||||||||||||||||    
T  37389255 taagttgttttcataagttctcccgaagagtctcacaaaacttatg 37389300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 157
Target Start/End: Original strand, 20257616 - 20257654
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaacttatgg 157  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  20257616 tttcataagttctcccaaacagtctcacaaaatttatgg 20257654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 21367747 - 21367784
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaacttatg 156  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  21367747 tttcataagttctcccaaacagtcccacaaaacttatg 21367784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 43046745 - 43046782
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaacttatg 156  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  43046745 tttcataagttctcccaaacagtctcacaaaacatatg 43046782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 3234013 - 3233970
Alignment:
Q  111 taagttgatttcataagttctccctaacagtctcacaaaactta 154  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  3234013 taagttgttttcataagttctccctaacagtctcacaaaactta 3233970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 119 - 157
Target Start/End: Complemental strand, 36514666 - 36514628
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaacttatgg 157  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  36514666 tttcataagttctccctaacagtctcaaaaaacttatgg 36514628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 2295176 - 2295213
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaacttatg 156  Q
    |||||||||||||||| |||||||||||||||||||||    
T  2295176 tttcataagttctcccaaacagtctcacaaaacttatg 2295213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 2777963 - 2778008
Alignment:
Q  111 taagttgatttcataagttctccctaacagtctcacaaaacttatg 156  Q
    ||||||| |||||||||||||||  |||||||||||||||||||||    
T  2777963 taagttggtttcataagttctcctaaacagtctcacaaaacttatg 2778008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 38001675 - 38001712
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaacttatg 156  Q
    |||||||||||||||| |||||||||||||||||||||    
T  38001675 tttcataagttctcccaaacagtctcacaaaacttatg 38001712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 50644253 - 50644208
Alignment:
Q  111 taagttgatttcataagttctccctaacagtctcacaaaacttatg 156  Q
    ||||||| |||||||||||||||| |||||||||||||||| ||||    
T  50644253 taagttgttttcataagttctcccaaacagtctcacaaaacatatg 50644208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 156
Target Start/End: Complemental strand, 33204382 - 33204347
Alignment:
Q  121 tcataagttctccctaacagtctcacaaaacttatg 156  Q
    |||||||||||||| |||||||||||||||||||||    
T  33204382 tcataagttctcccaaacagtctcacaaaacttatg 33204347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 9572091 - 9572054
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaacttatg 156  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  9572091 tttcataagttctcccaaacagtctcacaaatcttatg 9572054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 49938827 - 49938864
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaacttatg 156  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  49938827 tttcataagttctcccaaacaatctcacaaaacttatg 49938864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 4970790 - 4970745
Alignment:
Q  111 taagttgatttcataagttctccctaacagtctcacaaaacttatg 156  Q
    ||||||| |||||||||||||||| ||||||||||||| |||||||    
T  4970790 taagttgttttcataagttctcccaaacagtctcacaagacttatg 4970745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 44989674 - 44989630
Alignment:
Q  112 aagttgatttcataagttctccctaacagtctcacaaaacttatg 156  Q
    |||||| ||||||||||| |||| |||||||||||||||||||||    
T  44989674 aagttgttttcataagttttcccaaacagtctcacaaaacttatg 44989630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 156
Target Start/End: Original strand, 18765366 - 18765401
Alignment:
Q  121 tcataagttctccctaacagtctcacaaaacttatg 156  Q
    |||||||||||||| |||||||||||||||||||||    
T  18765366 tcataagttctcccaaacagtctcacaaaacttatg 18765401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 156
Target Start/End: Complemental strand, 18962583 - 18962536
Alignment:
Q  109 attaagttgatttcataagttctccctaacagtctcacaaaacttatg 156  Q
    ||||||||| |||||||||||||||  |||||||| ||||||||||||    
T  18962583 attaagttggtttcataagttctccaaaacagtctaacaaaacttatg 18962536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 19214396 - 19214359
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaacttatg 156  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  19214396 tttcataagttctcccaaacaatctcacaaaacttatg 19214359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 33678852 - 33678897
Alignment:
Q  111 taagttgatttcataagttctccctaacagtctcacaaaacttatg 156  Q
    ||||||| |||||||||||||||| ||  |||||||||||||||||    
T  33678852 taagttgttttcataagttctcccaaattgtctcacaaaacttatg 33678897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 30331831 - 30331868
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaacttatg 156  Q
    |||||||||||||||| |||||||||||||||||||||    
T  30331831 tttcataagttctcccaaacagtctcacaaaacttatg 30331868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 156
Target Start/End: Original strand, 24101011 - 24101045
Alignment:
Q  122 cataagttctccctaacagtctcacaaaacttatg 156  Q
    ||||||||||||| |||||||||||||||||||||    
T  24101011 cataagttctcccaaacagtctcacaaaacttatg 24101045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 1633490 - 1633453
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaacttatg 156  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  1633490 tttcataagttctccctaacagtataacaaaacttatg 1633453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 2142734 - 2142771
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaacttatg 156  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  2142734 tttcataagttctcccaaacagtctcataaaacttatg 2142771  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 27317451 - 27317496
Alignment:
Q  111 taagttgatttcataagttctccctaacagtctcacaaaacttatg 156  Q
    ||||||| |||||||||||||| | |||||||||| ||||||||||    
T  27317451 taagttgttttcataagttctctcaaacagtctcataaaacttatg 27317496  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 36534848 - 36534885
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaacttatg 156  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  36534848 tttcataagttatcccaaacagtctcacaaaacttatg 36534885  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 4606997 - 4607041
Alignment:
Q  111 taagttgatttcataagttctccctaacagtctcacaaaacttat 155  Q
    ||||||| ||||| |||||||||| || |||||||||||||||||    
T  4606997 taagttgttttcacaagttctcccaaatagtctcacaaaacttat 4607041  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 16451190 - 16451234
Alignment:
Q  111 taagttgatttcataagttctccctaacagtctcacaaaacttat 155  Q
    ||||||| |||||||||||||||| ||| |||||||| |||||||    
T  16451190 taagttgttttcataagttctcccaaacggtctcacagaacttat 16451234  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 10645382 - 10645338
Alignment:
Q  112 aagttgatttcataagttctccctaacagtctcacaaaacttatg 156  Q
    |||||| |||||||||||||||| |||||||| ||||||||||||    
T  10645382 aagttgttttcataagttctcccaaacagtcttacaaaacttatg 10645338  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 2455068 - 2455105
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaacttatg 156  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  2455068 tttcagaagttctcccaaacagtctcacaaaacttatg 2455105  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 20368179 - 20368134
Alignment:
Q  111 taagttgatttcataagttctccctaacagtctcacaaaacttatg 156  Q
    ||||||| |||||||||||||||| || ||||| ||||||||||||    
T  20368179 taagttgttttcataagttctcccaaatagtcttacaaaacttatg 20368134  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 31813241 - 31813278
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaacttatg 156  Q
    |||||||||||||||| || ||||||||||||||||||    
T  31813241 tttcataagttctcccaaatagtctcacaaaacttatg 31813278  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 836535 - 836491
Alignment:
Q  112 aagttgatttcataagttctccctaacagtctcacaaaacttatg 156  Q
    |||||| |||||||||||||||| |||||||||| || |||||||    
T  836535 aagttgttttcataagttctcccaaacagtctcataagacttatg 836491  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 153
Target Start/End: Complemental strand, 16457969 - 16457935
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaactt 153  Q
    |||||||||||||||| ||||||||||||||||||    
T  16457969 tttcataagttctcccaaacagtctcacaaaactt 16457935  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 1773094 - 1773056
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaacttatggaa 159  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  1773094 tttcataagttctccc--acagtctcacaaaacttatggaa 1773056  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 12425657 - 12425690
Alignment:
Q  123 ataagttctccctaacagtctcacaaaacttatg 156  Q
    |||||||||||| |||||||||||||||||||||    
T  12425657 ataagttctcccaaacagtctcacaaaacttatg 12425690  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 15015923 - 15015960
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaacttatg 156  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  15015923 tttcataagttctcccaaacagtctcacaaagcttatg 15015960  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 39248182 - 39248215
Alignment:
Q  123 ataagttctccctaacagtctcacaaaacttatg 156  Q
    |||||||||||| |||||||||||||||||||||    
T  39248182 ataagttctcccaaacagtctcacaaaacttatg 39248215  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 152
Target Start/End: Complemental strand, 41981693 - 41981660
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaact 152  Q
    |||||||||||||||| |||||||||||||||||    
T  41981693 tttcataagttctcccaaacagtctcacaaaact 41981660  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 3520657 - 3520693
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaacttat 155  Q
    |||||||||||||||| |||||||||||| |||||||    
T  3520657 tttcataagttctcccaaacagtctcacacaacttat 3520693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 5721218 - 5721178
Alignment:
Q  116 tgatttcataagttctccctaacagtctcacaaaacttatg 156  Q
    ||||| ||||||||||||| || ||||||||||||||||||    
T  5721218 tgattccataagttctcccaaaaagtctcacaaaacttatg 5721178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 149
Target Start/End: Original strand, 45622312 - 45622350
Alignment:
Q  111 taagttgatttcataagttctccctaacagtctcacaaa 149  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  45622312 taagttgttttcataagttctcccgaacagtctcacaaa 45622350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 49940166 - 49940120
Alignment:
Q  110 ttaagttgatttcataagttctccctaacagtctcacaaaacttatg 156  Q
    ||||| || |||||||||||||| | |||||||||||||||||||||    
T  49940166 ttaagctgttttcataagttctctcaaacagtctcacaaaacttatg 49940120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 21731646 - 21731609
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaacttatg 156  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  21731646 tttcataagttctcccaaacaatctcacaaaacttatg 21731609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 40174637 - 40174674
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaacttatg 156  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  40174637 tttcataagttatcccaaacagtctcacaaaacttatg 40174674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 39603160 - 39603124
Alignment:
Q  119 tttcataagttctccctaacagtctcacaaaacttat 155  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  39603160 tttcctaagttctcccaaacagtctcacaaaacttat 39603124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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