View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14334_low_4 (Length: 608)
Name: NF14334_low_4
Description: NF14334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14334_low_4 |
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| [»] chr6 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 111; Significance: 1e-55; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 490 - 608
Target Start/End: Original strand, 14567873 - 14567991
Alignment:
| Q |
490 |
ctaaccaataccgctcctccttgccgcttcgaaacctttgacatgtcccgtcctctatcctctggttgcgtcgctttcctcctgcatgacctgaccatag |
589 |
Q |
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| T |
14567873 |
ctaaccaataccgctcctccttgccgcttcgaaacccttgacatgtcccgtcctctatcctccggttgcgtcgctttcctcctgcatgacctgaccatag |
14567972 |
T |
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| Q |
590 |
accaatttcccctatcccc |
608 |
Q |
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| T |
14567973 |
accaatttcccctatcccc |
14567991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 520 - 570
Target Start/End: Original strand, 11142068 - 11142118
Alignment:
| Q |
520 |
gaaacctttgacatgtcccgtcctctatcctctggttgcgtcgctttcctc |
570 |
Q |
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| T |
11142068 |
gaaacccttgacctgtcccgtcctcgatcctccggttgcgtcgctttcctc |
11142118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 26189143 - 26189019
Alignment:
| Q |
64 |
agcctcgcgtgcccaaacccttaggtgtccgaaccaaacgttgttcaaagcatgtgataacttctcaacattcttcacattcgaataatctaacaaaacc |
163 |
Q |
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| T |
26189143 |
agcctcgcgtgcccaaaccctaaggtgtccaaaccaaacattatttaatttgtgcgatagcttctcaacattcttaacatttgaa-aacctcacaaaccc |
26189045 |
T |
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| Q |
164 |
atagacttgtccataagaatttcgtt |
189 |
Q |
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| T |
26189044 |
atatacttgtccacaagaattccgtt |
26189019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 533 - 608
Target Start/End: Original strand, 32221309 - 32221384
Alignment:
| Q |
533 |
tgtcccgtcctctatcctctggttgcgtcgctttcctcctgcatgacctgaccatagaccaatttcccctatcccc |
608 |
Q |
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| T |
32221309 |
tgtcccgtcctcgatcctccggttgcgtcgctttcctcttcctagacctaactagagaccaatttcccctatcccc |
32221384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 12322306 - 12322256
Alignment:
| Q |
80 |
acccttaggtgtccgaaccaaacgttgttcaaagcatgtgataacttctca |
130 |
Q |
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| T |
12322306 |
acccttagatgaccaaaccaaacattgttcaaagcatgtgataatttctca |
12322256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 504 - 570
Target Start/End: Original strand, 781 - 847
Alignment:
| Q |
504 |
tcctccttgccgcttcgaaacctttgacatgtcccgtcctctatcctctggttgcgtcgctttcctc |
570 |
Q |
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| T |
781 |
tcctccatgccgctttgaaacccttgacatgtcccgtcctcgatccttcggttgtgtcgctttcctc |
847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 537 - 604
Target Start/End: Original strand, 22746021 - 22746088
Alignment:
| Q |
537 |
ccgtcctctatcctctggttgcgtcgctttcctcctgcatgacctgaccatagaccaatttcccctat |
604 |
Q |
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| T |
22746021 |
ccgtcctcgatcctctggttgcgtcgctttcctctttcttgacctaactacagaccaatctcccctat |
22746088 |
T |
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