View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14334_low_5 (Length: 607)

Name: NF14334_low_5
Description: NF14334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14334_low_5
NF14334_low_5
[»] chr1 (2 HSPs)
chr1 (1-324)||(20602707-20603031)
chr1 (421-585)||(20603130-20603295)
[»] chr3 (6 HSPs)
chr3 (1-324)||(8506476-8506808)
chr3 (11-324)||(51647353-51647668)
chr3 (2-226)||(32015100-32015323)
chr3 (421-585)||(51647767-51647932)
chr3 (448-585)||(8506270-8506408)
chr3 (256-291)||(32014805-32014840)
[»] chr7 (1 HSPs)
chr7 (422-585)||(13602950-13603115)
[»] chr4 (1 HSPs)
chr4 (255-298)||(44162180-44162223)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 20602707 - 20603031
Alignment:
Q  1 taacctcccatcactatcaaccttt-tttcagctgccgtcaacctcgctgccatctctcccttattgatttctaaggttcgacatctcttcatttctttc 99  Q
    ||||||||| |||| |||||||||| ||||| ||||||||| |||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||     
T  20602707 taacctcccgtcaccatcaacctttctttca-ctgccgtcagcctcgctgccatctctcctttattgacttctagggttcgacatctcttcatttcttta 20602805  T
Q  100 tctatcgagtttgcatctcccgttgtgaatcaaaaatcaaccgcacccttcccactatctcatctccgttgcgaaatcgaatgcctatgggtaattgtga 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20602806 tctatcgagtttgcatctcccgttgtgaatcaaaaatcaaccgcacccttcccactatctcatctccgttgcgaaatcgaatgcctatgggtaattgtga 20602905  T
Q  200 taggttttgttttgttctttctttaacacttaatttcaata-nnnnnnnnngtaaatgcatctcatcttttctgctattcatataagcttcatcatctca 298  Q
    ||||||||||||||||||| |||||||||||||||||||||          | ||| ||||||||||||||||||||||||||||||||||||| |||||    
T  20602906 taggttttgttttgttcttcctttaacacttaatttcaatattatttttttgcaaacgcatctcatcttttctgctattcatataagcttcatcgtctca 20603005  T
Q  299 atttctttccaactaactcttcatct 324  Q
    | || | |||||||||||||||||||    
T  20603006 aattttgtccaactaactcttcatct 20603031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 421 - 585
Target Start/End: Original strand, 20603130 - 20603295
Alignment:
Q  421 ccttttcaatttactaggtttcattttctacaagctcactcagttgcgtattcatgcccaaccattttgagattttgactactgccaattttaacacatt 520  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  20603130 ccttttcagtttactaggtttcatgttctacaagctcactcagttgcgtattcatgcccaaccattttgagattttgactactgccaaatttgacacatt 20603229  T
Q  521 ctttatttacatgattactgttttttgt--tagcttttgtatttacagaggtctgatgccaacatac 585  Q
    ||||||||||||||||||||||||||||  ||||||||  |||||||||| ||| ||||||| ||||    
T  20603230 ctttatttacatgattactgttttttgttatagcttttcaatttacagagttct-atgccaaaatac 20603295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 8506808 - 8506476
Alignment:
Q  1 taacctcccatcactatcaaccttttttcagctgccgtcaacctcgctgccatctctcccttattgatttctaaggttcgacatctcttcatttctttct 100  Q
    ||||||||| |||| |||||||||| ||| |||||||||| ||||||||||||||||||  |||||| ||||| |||||||||||||||||||||||| |    
T  8506808 taacctcccgtcaccatcaacctttcttccgctgccgtcagcctcgctgccatctctcctatattgacttctagggttcgacatctcttcatttctttat 8506709  T
Q  101 ctatcga----gtttgcatctcccgttgtgaatcaaaaatcaaccgcacccttcccactatctcatctccgttgcgaaatcgaatgcctatgggtaattg 196  Q
    |||||||    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8506708 ctatcgatcgagtttgcatctcccgttgtgaataaaaaatcaaccgcacccttcccactatctcatctccgttgcgaaatcgaatgcctatgggtaattg 8506609  T
Q  197 tgataggttttgttttgttctttctttaacacttaatttcaata-----nnnnnnnnngtaaatgcatctcatcttttctgctattcatataagcttcat 291  Q
    |||||||||||||||||||||| |||||||||||||||||||||              ||||| ||||||||||||||||||||||||||||||||||||    
T  8506608 tgataggttttgttttgttcttcctttaacacttaatttcaatattatttttttttttgtaaacgcatctcatcttttctgctattcatataagcttcat 8506509  T
Q  292 catctcaatttctttccaactaactcttcatct 324  Q
    | |||||| || |||||||||||||||||||||    
T  8506508 cgtctcaaattttttccaactaactcttcatct 8506476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 11 - 324
Target Start/End: Original strand, 51647353 - 51647668
Alignment:
Q  11 tcactatcaaccttttttcagctgccgtcaacctcgctgccatctctcccttattgatttctaaggttcgacatctcttcatttctttctctatcgagtt 110  Q
    |||| |||||||||| ||| |||| ||||| |||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| |||||||||||    
T  51647353 tcaccatcaacctttcttccgctgtcgtcagcctcgctgccatctctcctttattgacttctagggttcgacatctcttcatttctttatctatcgagtt 51647452  T
Q  111 tgcatctcccgttgtgaatcaaaaatcaaccgcacccttcccactatctcatctccgttgcgaaatcgaatgcctatgggtaattgtgataggttttgtt 210  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  51647453 tgcatctcccgttgtgaatcaaaaatcaaccgcaccattcccactatttcatctccgttgcgaaatcaaatgcctatgggtaattgtgataggttttgtt 51647552  T
Q  211 ttgttctttctttaacacttaatttcaata--nnnnnnnnngtaaatgcatctcatcttttctgctattcatataagcttcatcatctcaatttctttcc 308  Q
    |||||||| |||||||||||||||||||||           ||||| ||||||||||||||||||||||||||||| ||||||| |||||| || ||| |    
T  51647553 ttgttcttcctttaacacttaatttcaatattattttttttgtaaacgcatctcatcttttctgctattcatataatcttcatcgtctcaaatttttttc 51647652  T
Q  309 aactaactcttcatct 324  Q
    |||||||| |||||||    
T  51647653 aactaactattcatct 51647668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 2 - 226
Target Start/End: Complemental strand, 32015323 - 32015100
Alignment:
Q  2 aacctcccatcactatcaaccttttttcagctgccgtcaacctcgctgccatctctcccttattgatttctaaggttcgacatctcttcatttctttctc 101  Q
    ||||||||  |||||||||||||| ||| || || |||||||||| |||  ||||||||||||||| || || |||||||||||||||||||||||||||    
T  32015323 aacctcccgccactatcaacctttcttccgccgctgtcaacctcgttgctgtctctcccttattgacttttagggttcgacatctcttcatttctttctc 32015224  T
Q  102 tatcgagtttgcatctcccgttgtgaatcaaaaatcaaccgcacccttcccactatctcatctccgttgcgaaatcgaatgcctatgggtaattgtgata 201  Q
      |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| | |||||||| ||||||||||||||| |||||||||||||    
T  32015223 agtcgagtttgcatctccggttgtgaatcaaacatcaaccgcacccttcccactatctcttatccgttgcaaaatcgaatgcctattggtaattgtgata 32015124  T
Q  202 ggttttgttttgttctttctttaac 226  Q
    || |||||||||||||| |||||||    
T  32015123 gg-tttgttttgttcttcctttaac 32015100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 421 - 585
Target Start/End: Original strand, 51647767 - 51647932
Alignment:
Q  421 ccttttcaatttactaggtttcattttctacaagctcactcagttgcgtattcatgcccaaccattttgagattttgactactgccaattttaacacatt 520  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  51647767 ccttttcagtttactaggtttcatgttctacaagctcactcagttgcgtattcatgcccaaccattttgagattttgactactaccaattttgacacatt 51647866  T
Q  521 ctttatttacatgattactgttttttgt--tagcttttgtatttacagaggtctgatgccaacatac 585  Q
    ||||||||||||||||||||||||||||  |||||||| ||||||||||| ||| ||||||| ||||    
T  51647867 ctttatttacatgattactgttttttgttatagcttttctatttacagagttct-atgccaaaatac 51647932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 448 - 585
Target Start/End: Complemental strand, 8506408 - 8506270
Alignment:
Q  448 ctacaagctcactcagttgcgtattcatgcccaaccattttgagattttgactactgccaattttaacacattctttatttacatgattactgttttttg 547  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8506408 ctacaagctcactcagttgcgtattcatgcccaaccattttgagattttgactactgccaattttgacacattctttatttacatgattactgttttttg 8506309  T
Q  548 t--tagcttttgtatttacagaggtctgatgccaacatac 585  Q
    |  |||||||| ||||||||||| ||| ||||||| ||||    
T  8506308 ttatagcttttctatttacagagttct-atgccaaaatac 8506270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 291
Target Start/End: Complemental strand, 32014840 - 32014805
Alignment:
Q  256 gcatctcatcttttctgctattcatataagcttcat 291  Q
    ||||||||||||||||||||||||||||||||||||    
T  32014840 gcatctcatcttttctgctattcatataagcttcat 32014805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 3e-65; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 422 - 585
Target Start/End: Complemental strand, 13603115 - 13602950
Alignment:
Q  422 cttttcaatttactaggtttcattttctacaagctcactcagttgcgtattcatgcccaaccattttgagattttgactactgccaattttaacacattc 521  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13603115 cttttcattttactaggtttcatgttctacaagttcactcagttgcgttttcatgcccaaccattttgagattttgactactgccaattttaacacattc 13603016  T
Q  522 tttatttacatgattactgttttttgt--tagcttttgtatttacagaggtctgatgccaacatac 585  Q
    ||||||||||| ||||||| |||||||  |||||||||||||||||||||| ||||||||||||||    
T  13603015 tttatttacataattactgatttttgttatagcttttgtatttacagaggtttgatgccaacatac 13602950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 298
Target Start/End: Original strand, 44162180 - 44162223
Alignment:
Q  255 tgcatctcatcttttctgctattcatataagcttcatcatctca 298  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  44162180 tgcatctcatcttttctgctattcatataagcttcatcacctca 44162223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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