View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14334_low_9 (Length: 541)
Name: NF14334_low_9
Description: NF14334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14334_low_9 |
 | |
|
| [»] scaffold0415 (2 HSPs) |
| | |
|
| [»] scaffold0559 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 17 - 527
Target Start/End: Complemental strand, 40805300 - 40804793
Alignment:
| Q |
17 |
agaaagaatcagtataggaaaatcatttgcttttcggatagtaaacaaagatggacaaatcattgcagatgcaaagcaaaaacagtcttcatccggggtt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| |
|
|
| T |
40805300 |
agaaagaatcagtataggaaaatcatttgcttttcggatagtaaacaaagatggacaaatcattgcagatgcaaagcaaaaacagtcatcgtcaggggtt |
40805201 |
T |
|
| Q |
117 |
gttctaagtaatgatgttctaacgttggacttggcctctggaacggatcatgc-------ccttataatggctttgataacggtctatggatcaatatgc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40805200 |
gttctaagtaatgatgttctaacgttggacttggccgctggaacggatcatgcatcatgcccttataatggctttgataacggtctatggatcaatatgc |
40805101 |
T |
|
| Q |
210 |
ggcttattgtagatacttcatactatgcaacaattcatttgaaggccctgatttcgaaagcttttcgcttttgtacactttttccattgtttgctgtctt |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40805100 |
ggcttattgtagatacttcatactatgcaacaattcatttgaaggcccttatttcaaaaacttttcgcttttgtacactttttccattgtttgctgtctt |
40805001 |
T |
|
| Q |
310 |
gtaagttttgtgaagttttgtaattagtgtttggcttaagtttgtataaaaagatcgtgagcttcatcggga-nnnnnnnnnnattttcactgagcaaca |
408 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40805000 |
gtaagtt----------ttgtaattagtgtttggcttaagtttgtataaaaagatcgtgagcttcatcgggatatttttttttattttcactgagcaaca |
40804911 |
T |
|
| Q |
409 |
tcaggatatgtaattagaaagatatgtttatgtatacatatatatattgtttacaatgaaaaaagatagaattaattatatttttaatctttggtttggt |
508 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40804910 |
tcaggatatgtaattagagagatatgtttatgtatacatatatatattgtttacaatg-aaaaagatagaattaattatatttttaatctttggtttggt |
40804812 |
T |
|
| Q |
509 |
taaaatttgagtttctgtg |
527 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
40804811 |
taaaatttgagtttctgtg |
40804793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 523
Target Start/End: Complemental strand, 40817278 - 40816773
Alignment:
| Q |
17 |
agaaagaatcagtataggaaaatcatttgcttttcggatagtaaacaaagatggacaaatcattgcagatgcaaagcaaaaacagtcttcatccggggtt |
116 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40817278 |
agaaagaatcagtacaggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaaagcaaaaacagtcttcatccggggtt |
40817179 |
T |
|
| Q |
117 |
gttctaagtaatgatgttctaacgttggacttggcctctggaacggatcatgcccttataatggctttgataacggtctatggatcaatatgcggcttat |
216 |
Q |
| |
|
||||| ||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||| |||||||| |||| |||||||| | |
|
|
| T |
40817178 |
gttctgagtaatgatgttctaactttggatttggctgctggaacggatcattcccttataatggctttgattacggtctacggattgatatgcggaaaaa |
40817079 |
T |
|
| Q |
217 |
tgtagatacttcatactatgcaacaattcatttgaaggccctgatttcgaaagcttttcgcttttgtacactttttccattgtttgctgtcttgtaagtt |
316 |
Q |
| |
|
|||||| | |||||| ||| || |||||||||||||| |||||| |||| ||||||||||||||||||||||||||| ||||| |||||||||| || |
|
|
| T |
40817078 |
tgtagaaatttcatatgatg-tacgattcatttgaaggctctgattcagaaaacttttcgcttttgtacactttttccatcgtttgatgtcttgtaaatt |
40816980 |
T |
|
| Q |
317 |
ttgtgaagttttgtaattagtgtttggcttaagtttgtataaaaagatcgtg----agcttcatcgggannnnnnnnnnattttcactgagcaacatcag |
412 |
Q |
| |
|
|||| |||||| |||| |||||||| || | ||||| |||||||||||| || ||||||||| || ||||||||||| |||||| |
|
|
| T |
40816979 |
ttgtaaagtttagtaactagtgtttagc-tcagtttatataaaaagatcatgagctagcttcatcaagatctttttt---ttttcactgagtttcatcag |
40816884 |
T |
|
| Q |
413 |
gatatgtaattagaaagatatgtttatgtatacatatatatattgtttacaatgaaa-aaagatagaattaattatatttttaatctttggttt-ggtta |
510 |
Q |
| |
|
||| |||||||||| || ||||| |||||| || ||||||||||| | ||| |||| ||| |||||||||||| ||||||| ||||||||||| ||| |
|
|
| T |
40816883 |
gatctgtaattagagaggtatgtatatgtaaac--atatatattgtatgcaaagaaataaatatagaattaattgtattttttatctttggtttacatta |
40816786 |
T |
|
| Q |
511 |
aaatttgagtttc |
523 |
Q |
| |
|
||||||||||||| |
|
|
| T |
40816785 |
aaatttgagtttc |
40816773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 17 - 521
Target Start/End: Complemental strand, 40812119 - 40811608
Alignment:
| Q |
17 |
agaaagaatcagtataggaaaatcatttgcttttcggatagtaaacaaagatggacaaatcattgcagatgcaaagcaaaaacagtcttcatccggggtt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||| || || |||||| |
|
|
| T |
40812119 |
agaaagaatcagtataggaaaatcatttgcttttcggatagtaaacaaagatggagaaatcattgctgaggcaaagcaaaaacagtcatcctcaggggtt |
40812020 |
T |
|
| Q |
117 |
gttctaagtaatgatgttctaacgttggacttggcctctggaacggatcatgcccttataatggctttgataacggtctatggatcaatatgcggcttat |
216 |
Q |
| |
|
||||| ||||| ||||||||||||||||| |||||| | || ||||||| ||||||| | ||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
40812019 |
gttctgagtaacgatgttctaacgttggatttggccaccggcgtggatcattcccttattacggctttgataacggtatatggattgatatgcggcttga |
40811920 |
T |
|
| Q |
217 |
tgtag---atacttcatac-----------tatgca----acaattcatttgaaggccctgatttcgaaagcttttcgcttttgtacactttttccattg |
298 |
Q |
| |
|
||||| ||| ||||||| |||||| |||||||||| |||||||||||| | || ||||| |||||| |||||||||||||| | |
|
|
| T |
40811919 |
tgtagattatatttcatactaagagatttttatgcacaattcaattcattttaaggccctgattgggcaaactttttgcttttctacactttttccatcg |
40811820 |
T |
|
| Q |
299 |
tttgctgtcttgtaagttttgtgaagttttgtaattagtgtttggcttaagtttgtataaaaagatcgtgagcttcatcgggannnnnnnnnnattttca |
398 |
Q |
| |
|
| || ||||||||| |||||||| || |||||||| || | |||||||||||||||||| ||||||||||| ||| |||| | |
|
|
| T |
40811819 |
tctgatgtcttgta---------aagttttgcaactagtgtttagc-tcagtttgtataaaaagatcatgagcttcatcaggatcttctttt--ttttta |
40811732 |
T |
|
| Q |
399 |
ctgagcaacatcaggatatgtaattagaaagatatgtttatgtatacatatatatattgtttacaatgaaaaaagatagaattaattatatttttaatct |
498 |
Q |
| |
|
||||||| |||||||| |||||||| | |||||||| | ||| ||||||||||||||| ||||| |||||||||||||||||||||||| ||| |||| |
|
|
| T |
40811731 |
ctgagcatcatcaggaactgtaattatagagatatgtacaagtacacatatatatattgtatacaaagaaaaaagatagaattaattatatatttgatct |
40811632 |
T |
|
| Q |
499 |
ttggtttg-gttaaaatttgagtt |
521 |
Q |
| |
|
|||||||| ||||||||||||||| |
|
|
| T |
40811631 |
ttggtttgcgttaaaatttgagtt |
40811608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 17 - 310
Target Start/End: Complemental strand, 40807022 - 40806728
Alignment:
| Q |
17 |
agaaagaatcagtataggaaaatcatttgcttttcggatagtaaacaaagatggacaaatcattgcagatgcaaagcaaaaacagtcttcatccggggtt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| ||||||||||||| ||| |||||||||||| |
|
|
| T |
40807022 |
agaaagaatcagtataggaaaatcatttgcttttaggattataaacaaagatggagaaatcattgcagaggcaaagcaaaaactgtcgtcatccggggtt |
40806923 |
T |
|
| Q |
117 |
gttctaagtaatgatgttctaacgttggacttggcctctggaacggatcatgcccttataatggctttgataacggtctatggatcaatatgcggcttat |
216 |
Q |
| |
|
||||| ||||||||| ||||||| ||||| ||||| |||| ||||||||| | |||||||||||||||||||||||||| |||| |||||||| | |
|
|
| T |
40806922 |
gttctgagtaatgatattctaactttggatttggcggctggcacggatcattctcttataatggctttgataacggtctacggattgatatgcggtaaaa |
40806823 |
T |
|
| Q |
217 |
tgtagatacttcatac--tatgcaacaattcatttgaaggccctgatttcgaaagcttttcgcttttgtacactttttccattgtttgctgtcttg |
310 |
Q |
| |
|
||||| || ||||||| ||||| ||||||||||||||||| ||||| |||| ||||| | |||||| ||| |||||||||||||| ||||||| |
|
|
| T |
40806822 |
tgtagttatttcatactatatgc-acaattcatttgaaggctatgattcggaaaactttttgattttgttcacattttccattgtttgttgtcttg |
40806728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 40825844 - 40825637
Alignment:
| Q |
17 |
agaaagaatcagtataggaaaatcatttgcttttcggatagtaaacaaagatggacaaatcattgcagatgcaaagcaaaaacagtcttcatccggggtt |
116 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
40825844 |
agaaagaatcagcataggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaaagcaaaaacagtcttcatcaggggtt |
40825745 |
T |
|
| Q |
117 |
gttctaagtaatgatgttctaacgttggacttggcctctggaacggatcatgcccttataatggctttgataacggtctatggatcaatatgcggcttat |
216 |
Q |
| |
|
||||| ||||||||||||||||| ||||| ||||| |||| ||||||| |||||||||| ||| |||| ||||||||||| | |||||||||||| |
|
|
| T |
40825744 |
gttctgagtaatgatgttctaactttggatttggcggctggcgtggatcattcccttataatcgctctgatcacggtctatggtttgatatgcggcttaa |
40825645 |
T |
|
| Q |
217 |
tgtagata |
224 |
Q |
| |
|
|||||||| |
|
|
| T |
40825644 |
tgtagata |
40825637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 17 - 372
Target Start/End: Original strand, 15086 - 15439
Alignment:
| Q |
17 |
agaaagaatcagtataggaaaatcatttgcttttcggatagtaaacaaagatggacaaatcattgcagatgcaaagcaaaaacagtcttcatccggggtt |
116 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15086 |
agaaagaatcagtacaggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaaagcaaaaacagtcttcatccggggtt |
15185 |
T |
|
| Q |
117 |
gttctaagtaatgatgttctaacgttggacttggcctctggaacggatcatgcccttataatggctttgataacggtctatggatcaatatgcggcttat |
216 |
Q |
| |
|
||||| ||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||| |||||||| |||| |||||||| | |
|
|
| T |
15186 |
gttctgagtaatgatgttctaactttggatttggctgctggaacggatcattcccttataatggctttgattacggtctacggattgatatgcggaaaaa |
15285 |
T |
|
| Q |
217 |
tgtagatacttcatactatgcaacaattcatttgaaggccctgatttcgaaagcttttcgcttttgtacactttttccattgtttgctgtcttgtaagtt |
316 |
Q |
| |
|
|||||| | |||||| ||| || |||||||||||||| |||||| |||| ||||||||||||||||||||||||||| ||||| |||||||||| || |
|
|
| T |
15286 |
tgtagaaatttcatatgatg-tacgattcatttgaaggctctgattcagaaaacttttcgcttttgtacactttttccatcgtttgatgtcttgtaaatt |
15384 |
T |
|
| Q |
317 |
ttgtgaagttttgtaattagtgtttggcttaagtttgtataaaaagatcgtgagct |
372 |
Q |
| |
|
|||| |||||| |||| |||||||| || | ||||| |||||||||||| |||||| |
|
|
| T |
15385 |
ttgtaaagtttagtaactagtgtttagc-tcagtttatataaaaagatcatgagct |
15439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 453
Target Start/End: Original strand, 15461 - 15521
Alignment:
| Q |
393 |
ttttcactgagcaacatcaggatatgtaattagaaagatatgtttatgtatacatatatat |
453 |
Q |
| |
|
||||||||||| ||||||||| |||||||||| || ||||| |||||| |||||||||| |
|
|
| T |
15461 |
ttttcactgagtttcatcaggatctgtaattagagaggtatgtatatgtaaacatatatat |
15521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 123; Significance: 6e-63; HSPs: 1)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 7607 - 7903
Alignment:
| Q |
17 |
agaaagaatcagtataggaaaatcatttgcttttc-ggatagtaaacaaagatggacaaatcattgcagatgcaaagcaaaaa-cagtcttcatccgggg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||||||||| | ||| |||||||||| |
|
|
| T |
7607 |
agaaagaatcagtataggaaaatcatttgctttttaggattataaacaaagatggagaaatcattgcagaggcaaagcaaaaaactgtcgtcatccgggg |
7706 |
T |
|
| Q |
115 |
ttgttctaagtaatgatgttctaacgttggacttggcctctggaacggatcatgcccttataatggctttgataacggtctatggatcaatatgcggctt |
214 |
Q |
| |
|
||||||| ||||||||| ||||||| ||||| ||||| |||| ||||||||| | |||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
7707 |
ttgttctgagtaatgatattctaactttggatttggcggctggcacggatcattctcttataatggctttgataacggtctacggattgatatgcggtaa |
7806 |
T |
|
| Q |
215 |
attgtagatacttcatac--tatgcaacaattcatttgaaggccctgatttcgaaagcttttcgcttttgtacactttttccattgtttgctgtcttg |
310 |
Q |
| |
|
| ||||| || ||||||| ||||| ||||||||||||||||| ||||| |||| ||||| | |||||| ||| |||||||||||||| ||||||| |
|
|
| T |
7807 |
aatgtagttatttcatactatatgc-acaattcatttgaaggctatgattcggaaaactttttgattttgttcacattttccattgtttgttgtcttg |
7903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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