View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14335_high_14 (Length: 433)
Name: NF14335_high_14
Description: NF14335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14335_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 3 - 422
Target Start/End: Original strand, 6916946 - 6917374
Alignment:
| Q |
3 |
catggcaggcttcttgtatattgttccggtctggccaaaagggcggccatatccaagtcctttcaacaatttggagttcattgattcattctgaattatc |
102 |
Q |
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| T |
6916946 |
catggcaggcttcttgtatattgttccggtctggccaaaagggcgaccatatccaagtcctttcaacaatttggagttcattgattcattctgaattatc |
6917045 |
T |
|
| Q |
103 |
accttcacaaagctaaggtttagaaacagtcacacagtgacagacgcagcaatgttcctctgaatctcaataggcagaagaactgttggaagaaaattca |
202 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6917046 |
accttcacaaagctaaggtctagaaacagtcacacagtgacagacgcagcaatgttcctctgaatctcaataggcagaagaactgttggaagaaaattca |
6917145 |
T |
|
| Q |
203 |
gtttagcatcattcacggcggcgacagtgaagtctccgttgaaccgccttcattagtcaaagct-------cgccattgacagcaccccgagtttcccat |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
6917146 |
gtttagcatcattcacggcggcgacagtgaagtctccgccaaaccgccttcattagtcaaagctcgagcagcgccattgacagcacgccgagtttcccac |
6917245 |
T |
|
| Q |
296 |
ggacacgctcagagattgatcctgaagccgcagcagtttgagacgagtccgctcccgtatctggcaatcagtttgagctgtgctgtgctcgtggaagcct |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| | |
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| T |
6917246 |
agacacgctcagagattgatcctgaagccgcagcagtttgagacgagtctgctcccgtatctggcaaacagtttgagctgtgccatgctcgtggaagcgt |
6917345 |
T |
|
| Q |
396 |
agccgcccaggaga--ccgcccaagaatt |
422 |
Q |
| |
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|||| ||||||||| ||||||||||||| |
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| T |
6917346 |
agccacccaggagaggccgcccaagaatt |
6917374 |
T |
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