View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14335_high_22 (Length: 328)
Name: NF14335_high_22
Description: NF14335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14335_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 35773985 - 35773665
Alignment:
| Q |
1 |
atggttacaatagaaagtataatagtaagatcagcatgcatcaattattaacatactaaccatattaaccaagctagcaatcatatatatataactagtt |
100 |
Q |
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| T |
35773985 |
atggttacaatagaaagtataatagtaagatcagcatgcatcaattattaacatactaaccatattaaccaagctagcaatcatatatatataactagtt |
35773886 |
T |
|
| Q |
101 |
ccaatttatgtccggaagttgaaattgttgcctcattacaccatctccaagaattgaattttgatgaaaagttgtgcttggtggaagctggctaagcagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35773885 |
ccaatttatgtccggaagttgaaattgttgcctcattacaccatctccaagaattgaattttgatgaaaagttgtgcttggtggaagctggctaagcagt |
35773786 |
T |
|
| Q |
201 |
gaaacaaatgaattattttcctcagcattgctgcctattccactgttaagatctccatgaaaccgtttgcttgaagaagatgatcctggtgaccctgttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35773785 |
gaaacaaatgaattattttcctcagcattgctgctaattccactgttaagatctccatgaaaccgtttgcttgaagaagatgaccctggtgaccctgttt |
35773686 |
T |
|
| Q |
301 |
cattccaaaactgtgatgatg |
321 |
Q |
| |
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||||||||||||||||||||| |
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| T |
35773685 |
cattccaaaactgtgatgatg |
35773665 |
T |
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