View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14335_high_28 (Length: 223)
Name: NF14335_high_28
Description: NF14335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14335_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 97 - 205
Target Start/End: Original strand, 8411432 - 8411540
Alignment:
| Q |
97 |
gtacgtttccctcattcttactaaattaaattcaactttactccgactcaagctaaattggggaagaaaagatatatatcatgaattctcctactcaatt |
196 |
Q |
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|||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8411432 |
gtacatttccctcattcttactaaaaaaatctcaactttactccgactcaagctaaattggggaagaaaagatatatatcatgaattctcctactcaatt |
8411531 |
T |
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| Q |
197 |
acattatat |
205 |
Q |
| |
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||||||||| |
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| T |
8411532 |
acattatat |
8411540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 97 - 205
Target Start/End: Original strand, 8433530 - 8433638
Alignment:
| Q |
97 |
gtacgtttccctcattcttactaaattaaattcaactttactccgactcaagctaaattggggaagaaaagatatatatcatgaattctcctactcaatt |
196 |
Q |
| |
|
|||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8433530 |
gtacatttccctcattcttactaaaaaaatctcaactttactccgactcaagctaaattggggaagaaaagatatatatcatgaattctcctactcaatt |
8433629 |
T |
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| Q |
197 |
acattatat |
205 |
Q |
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||||||||| |
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| T |
8433630 |
acattatat |
8433638 |
T |
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