View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14335_high_3 (Length: 825)
Name: NF14335_high_3
Description: NF14335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14335_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 113 - 633
Target Start/End: Complemental strand, 15378643 - 15378123
Alignment:
| Q |
113 |
gttttcatggaaactcaattttccatgtactccgcgacccaccaattaaattagatataaaattatggttaatttagttgagtatatggttaaacgtgtt |
212 |
Q |
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| T |
15378643 |
gttttcatggaaactcaattttccatgtactccgcgacccaccaattaaattagatataaaattatggttaatttagttgagtatatggttaaacgtgtt |
15378544 |
T |
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| Q |
213 |
taaaattgtaaaattatagttaatcaagaagttgaattacttaaattttgatccagactaaaattaacaacaaattcaattatattaaaccacatttttg |
312 |
Q |
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| T |
15378543 |
taaaattgtaaaattatagttaatcaagaagttaaattagttaaattttgatccagactaaaattaacaacaaattcaattaaattaaaccacattttgg |
15378444 |
T |
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| Q |
313 |
aacgtgactaaaataacgtcacaattgtagaaaaaattgggtttctaaatatcattattcctaaatataaaggtatttttgtatctaattaataaatcga |
412 |
Q |
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| T |
15378443 |
aacgtgactaaaataacgtcacaattgtagaaaaaaatgggtttctaaatatcattattcctaaatataaaggtatttttgtatctaattaataaatcga |
15378344 |
T |
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| Q |
413 |
gatttttaagaagactaactagaaaactttaaaattttaataatgtactattttcttttgtttacatttttgcaaaaagaaatttaatgcacaaagtttg |
512 |
Q |
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| T |
15378343 |
gatttttaagaagactaactagaaaactttaaaattttaataatgtactattttcttttgtttacatttttgcaaaaagaaatttagtacacaaagtttg |
15378244 |
T |
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| Q |
513 |
ttactacaaattctctaataagcgaaatgatatttcatcaatcaaaatgtgacaacttttataataccttataaagataaaccctaataagcattaattt |
612 |
Q |
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| T |
15378243 |
ttactacaaattctctaataagtgaaatcatatttgatcaatcaaaatgtgacaacttttataacaccttataaagatacaccctaataagcattaattt |
15378144 |
T |
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| Q |
613 |
gatttgattaataaacaaaga |
633 |
Q |
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| T |
15378143 |
gatttgattaataaacaaaga |
15378123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 660 - 810
Target Start/End: Complemental strand, 15378103 - 15377953
Alignment:
| Q |
660 |
cactattattaaattaataaccctataaaaatagagtctaaagtaacttttctcatgagatacatacatggtcgagaaatgatacattaccccttgcgga |
759 |
Q |
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| T |
15378103 |
cactattaataaattaataaccctataaaaatagtgtctaaagtaacttttctcatgagatacatacatgttcgagaaatgatacattaccccttgcgga |
15378004 |
T |
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| Q |
760 |
ttcattatcataaacgaactacaactactagtaaactttattaggcagctg |
810 |
Q |
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| T |
15378003 |
ttcattatcataaacgaactactactacaagtaaactttattaggcagctg |
15377953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 15378742 - 15378685
Alignment:
| Q |
14 |
ataattctggatacttatagaactagacgtaaataagtaagtacagtgaatcctgtcg |
71 |
Q |
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| T |
15378742 |
ataattctggatacttatagaacaagacgtaaataagtaagtacggtgaatcctgtcg |
15378685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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