View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14335_high_6 (Length: 618)

Name: NF14335_high_6
Description: NF14335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14335_high_6
NF14335_high_6
[»] chr1 (1 HSPs)
chr1 (54-602)||(7801484-7802034)
[»] chr3 (6 HSPs)
chr3 (18-54)||(5553167-5553203)
chr3 (18-54)||(25531605-25531641)
chr3 (18-53)||(5554470-5554505)
chr3 (18-53)||(23460172-23460207)
chr3 (18-47)||(13041906-13041935)
chr3 (18-47)||(13049983-13050012)
[»] scaffold0026 (1 HSPs)
scaffold0026 (18-53)||(741-776)
[»] scaffold0021 (2 HSPs)
scaffold0021 (18-53)||(17627-17662)
scaffold0021 (18-53)||(27158-27193)
[»] scaffold0018 (1 HSPs)
scaffold0018 (18-53)||(764-799)
[»] chr8 (3 HSPs)
chr8 (18-53)||(8366077-8366112)
chr8 (18-47)||(17277385-17277414)
chr8 (18-47)||(17278353-17278382)
[»] chr7 (5 HSPs)
chr7 (18-53)||(9647614-9647649)
chr7 (18-53)||(40998898-40998933)
chr7 (18-53)||(41000758-41000793)
chr7 (18-47)||(7842652-7842681)
chr7 (18-54)||(24790194-24790230)
[»] chr6 (1 HSPs)
chr6 (18-53)||(12037098-12037133)
[»] chr5 (1 HSPs)
chr5 (18-53)||(38936687-38936722)
[»] chr4 (1 HSPs)
chr4 (18-53)||(13518639-13518674)
[»] chr2 (6 HSPs)
chr2 (18-53)||(22299660-22299695)
chr2 (18-53)||(22300575-22300610)
chr2 (18-53)||(24806059-24806094)
chr2 (18-53)||(24806964-24806999)
chr2 (18-53)||(24808820-24808855)
chr2 (18-54)||(31974172-31974208)
[»] scaffold0359 (1 HSPs)
scaffold0359 (18-47)||(8941-8970)


Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 54 - 602
Target Start/End: Original strand, 7801484 - 7802034
Alignment:
Q  54 gctcctcaaatgcccaaacaattttatcaaagtcctggtgcaacgaaggagttgatgtcgttcttagtggatcaaagatcaggaaattctcatatttcag 153  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7801484 gctcctcaaatgcccaaacaattttatcaaaatcctggtgcaacgaaggagttgatgtcgttcttagtggatcaaagatcaggaaattctcatattttag 7801583  T
Q  154 agagagaatgttgatgtgtcatatgtgatttaatagtttcacattgaatagaagagtatatgttaga-aacatataagtgaggtgacacataccccatta 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||| ||||||||    
T  7801584 agagagaatgttgatgtgtcatatgtgatttaatagtttcacattgaatagaatagtagatgttagacaacatataagtgaggtgacacatgccccatta 7801683  T
Q  253 tttataatttttgatgaaaatgtgatgtccaaactcatttgttcagttt--gtgag-----tgtgatgatccacaattttaaaggtattcaatcactaat 345  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||  |||||     |||||||||||||||||||||||||||||||||||||||    
T  7801684 tttataattttttatgaaaatgtgatgtccaaactcatttgttcagtttgcgtgagtccaatgtgatgatccacaattttaaaggtattcaatcactaat 7801783  T
Q  346 tcctgtatatatagaaaattaaacaactgttaaaatttcgtatatataacatgttgcnnnnnnnnnnnnncacatttccagatatcttattcttttatta 445  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||    
T  7801784 tcttgtatatatagaaaattaaacaactgttaaaatttcgtatatataacatgttg------aaaaaaaacacatttccagatatcttattcttttatta 7801877  T
Q  446 ttgaatttaataaaatcattcaacagtttactctaatcacatatagctaaatttgcaaggataaaccaataaatgaagcacacagnnnnnnnnnnnnnna 545  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |    
T  7801878 ttgaatttaataaaatcattcaacagtttactctaatcacatatagctaaatttgcaaggataaaccaataaatgaagcacacagttttttaatttttta 7801977  T
Q  546 acaaaatgaaccacccaacccacaattatataagtgctttttggactgtgttcatcc 602  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7801978 acaaaatgaaccacacaacccacaattatataagtgctttttggactgtgttcatcc 7802034  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 5553203 - 5553167
Alignment:
Q  18 attcttgtcaagagagagaattttaggatcgcatcag 54  Q
    |||||||||||||||||||||||||||||| ||||||    
T  5553203 attcttgtcaagagagagaattttaggatcacatcag 5553167  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 25531641 - 25531605
Alignment:
Q  18 attcttgtcaagagagagaattttaggatcgcatcag 54  Q
    |||||||||||||||||||||||||||||| ||||||    
T  25531641 attcttgtcaagagagagaattttaggatcacatcag 25531605  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 5554470 - 5554505
Alignment:
Q  18 attcttgtcaagagagagaattttaggatcgcatca 53  Q
    |||||||||||||||||||||||||||||| |||||    
T  5554470 attcttgtcaagagagagaattttaggatcacatca 5554505  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 23460207 - 23460172
Alignment:
Q  18 attcttgtcaagagagagaattttaggatcgcatca 53  Q
    |||||||||||||||||||||||||||||| |||||    
T  23460207 attcttgtcaagagagagaattttaggatcacatca 23460172  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 13041935 - 13041906
Alignment:
Q  18 attcttgtcaagagagagaattttaggatc 47  Q
    ||||||||||||||||||||||||||||||    
T  13041935 attcttgtcaagagagagaattttaggatc 13041906  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 13050012 - 13049983
Alignment:
Q  18 attcttgtcaagagagagaattttaggatc 47  Q
    ||||||||||||||||||||||||||||||    
T  13050012 attcttgtcaagagagagaattttaggatc 13049983  T

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Target: scaffold0026 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 741 - 776
Alignment:
Q  18 attcttgtcaagagagagaattttaggatcgcatca 53  Q
    |||||||||||||||||||||||||||||| |||||    
T  741 attcttgtcaagagagagaattttaggatcacatca 776  T

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Target: scaffold0021 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 17662 - 17627
Alignment:
Q  18 attcttgtcaagagagagaattttaggatcgcatca 53  Q
    |||||||||||||||||||||||||||||| |||||    
T  17662 attcttgtcaagagagagaattttaggatcacatca 17627  T

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Target: scaffold0021; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 27193 - 27158
Alignment:
Q  18 attcttgtcaagagagagaattttaggatcgcatca 53  Q
    |||||||||||||||||||||||||||||| |||||    
T  27193 attcttgtcaagagagagaattttaggatcacatca 27158  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 764 - 799
Alignment:
Q  18 attcttgtcaagagagagaattttaggatcgcatca 53  Q
    |||||||||||||||||||||||||||||| |||||    
T  764 attcttgtcaagagagagaattttaggatcacatca 799  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 8366112 - 8366077
Alignment:
Q  18 attcttgtcaagagagagaattttaggatcgcatca 53  Q
    |||||||||||||||||||||||||||||| |||||    
T  8366112 attcttgtcaagagagagaattttaggatcacatca 8366077  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 17277414 - 17277385
Alignment:
Q  18 attcttgtcaagagagagaattttaggatc 47  Q
    ||||||||||||||||||||||||||||||    
T  17277414 attcttgtcaagagagagaattttaggatc 17277385  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 17278353 - 17278382
Alignment:
Q  18 attcttgtcaagagagagaattttaggatc 47  Q
    ||||||||||||||||||||||||||||||    
T  17278353 attcttgtcaagagagagaattttaggatc 17278382  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 9647614 - 9647649
Alignment:
Q  18 attcttgtcaagagagagaattttaggatcgcatca 53  Q
    |||||||||||||||||||||||||||||| |||||    
T  9647614 attcttgtcaagagagagaattttaggatcacatca 9647649  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 40998898 - 40998933
Alignment:
Q  18 attcttgtcaagagagagaattttaggatcgcatca 53  Q
    |||||||||||||||||||||||||||||| |||||    
T  40998898 attcttgtcaagagagagaattttaggatcacatca 40998933  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 41000758 - 41000793
Alignment:
Q  18 attcttgtcaagagagagaattttaggatcgcatca 53  Q
    |||||||||||||||||||||||||||||| |||||    
T  41000758 attcttgtcaagagagagaattttaggatcacatca 41000793  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 7842681 - 7842652
Alignment:
Q  18 attcttgtcaagagagagaattttaggatc 47  Q
    ||||||||||||||||||||||||||||||    
T  7842681 attcttgtcaagagagagaattttaggatc 7842652  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 24790194 - 24790230
Alignment:
Q  18 attcttgtcaagagagagaattttaggatcgcatcag 54  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  24790194 attcttgtcaagagagataattttaggatcacatcag 24790230  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 12037098 - 12037133
Alignment:
Q  18 attcttgtcaagagagagaattttaggatcgcatca 53  Q
    |||||||||||||||||||||||||||||| |||||    
T  12037098 attcttgtcaagagagagaattttaggatcacatca 12037133  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 38936722 - 38936687
Alignment:
Q  18 attcttgtcaagagagagaattttaggatcgcatca 53  Q
    |||||||||||||||||||||||||||||| |||||    
T  38936722 attcttgtcaagagagagaattttaggatcacatca 38936687  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 13518639 - 13518674
Alignment:
Q  18 attcttgtcaagagagagaattttaggatcgcatca 53  Q
    |||||||||||||||||||||||||||||| |||||    
T  13518639 attcttgtcaagagagagaattttaggatcacatca 13518674  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 22299695 - 22299660
Alignment:
Q  18 attcttgtcaagagagagaattttaggatcgcatca 53  Q
    |||||||||||||||||||||||||||||| |||||    
T  22299695 attcttgtcaagagagagaattttaggatcacatca 22299660  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 22300575 - 22300610
Alignment:
Q  18 attcttgtcaagagagagaattttaggatcgcatca 53  Q
    |||||||||||||||||||||||||||||| |||||    
T  22300575 attcttgtcaagagagagaattttaggatcacatca 22300610  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 24806094 - 24806059
Alignment:
Q  18 attcttgtcaagagagagaattttaggatcgcatca 53  Q
    |||||||||||||||||||||||||||||| |||||    
T  24806094 attcttgtcaagagagagaattttaggatcacatca 24806059  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 24806964 - 24806999
Alignment:
Q  18 attcttgtcaagagagagaattttaggatcgcatca 53  Q
    |||||||||||||||||||||||||||||| |||||    
T  24806964 attcttgtcaagagagagaattttaggatcacatca 24806999  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 24808820 - 24808855
Alignment:
Q  18 attcttgtcaagagagagaattttaggatcgcatca 53  Q
    |||||||||||||||||||||||||||||| |||||    
T  24808820 attcttgtcaagagagagaattttaggatcacatca 24808855  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 31974172 - 31974208
Alignment:
Q  18 attcttgtcaagagagagaattttaggatcgcatcag 54  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  31974172 attcttttcaagagagagaattttaggatcacatcag 31974208  T

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Target: scaffold0359 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 8941 - 8970
Alignment:
Q  18 attcttgtcaagagagagaattttaggatc 47  Q
    ||||||||||||||||||||||||||||||    
T  8941 attcttgtcaagagagagaattttaggatc 8970  T

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