View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14335_high_8 (Length: 551)
Name: NF14335_high_8
Description: NF14335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14335_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 41919596 - 41919996
Alignment:
| Q |
1 |
aatggttaaaagatataccaccaaatgaagcaaagtaagtataatcatctatgtgactatgtctatattaggcacccagatgagtttaannnnnnnaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
41919596 |
aatggttaaaagatataccaccaaatgaagcaaagtaagtataatcatctatgtgactatgtctatattaggcatccagatgagttt---ttttttaatc |
41919692 |
T |
|
| Q |
101 |
aagcaaaatgtacgttcattttatagggaatattttttgagcatatctggattgggtttgaaaagtgtggaatgtttaaggcttttaactcttcaacata |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41919693 |
aagcaaaatgt----tcattttatagggaatattttttgagcatatttggattgggtttgaaaagtgtggaatgtttaaggcttttaactcttcaacata |
41919788 |
T |
|
| Q |
201 |
tttcttttccggtaagattataagtagacacaaattcttgtcttaatgaatgaaactatttttgttagataaatatatannnnnnnnacttttgaaaggt |
300 |
Q |
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| T |
41919789 |
tttcttttccggtaagaatataagtagacacaaattcttgttttaatgaatgaaactatttttgttagataaatatat---ttttttacttttgaaaggt |
41919885 |
T |
|
| Q |
301 |
ggatgtaaatgttggacgaattgttgtacgattgggatgggttcccctgcaaccattaccagaatcaattcaaatacataatttagagaagtaagacgta |
400 |
Q |
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| T |
41919886 |
ggatgtaaatgttggacgaattgttgtacgattgggatgggtccccctgcaaccattaccagaatcaattcaaatacataatttagagaagtaagacgta |
41919985 |
T |
|
| Q |
401 |
ctcccataaag |
411 |
Q |
| |
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||||||||||| |
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| T |
41919986 |
ctcccataaag |
41919996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 446 - 537
Target Start/End: Original strand, 41920024 - 41920115
Alignment:
| Q |
446 |
aacactactcattaataaaccattttgttttgaaacaggtttccggatccaatcaaaattcaacaatatctttggccaagactatgcaaact |
537 |
Q |
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| T |
41920024 |
aacactattcattaattaaccattttgttttgaaacaggtttccggatccaatcaaaattcaacaatatctttggccaagactatgcaaact |
41920115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 115 - 267
Target Start/End: Original strand, 1689197 - 1689347
Alignment:
| Q |
115 |
ttcattttatagggaatattttttgagcatatctggattgggtttgaaaagtgtggaatgtttaaggcttttaactcttcaacatatttcttttccggta |
214 |
Q |
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||||| ||||||||||||| |||||| ||||| ||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
1689197 |
ttcatgttatagggaatatcttttgaacatatttggtttgggtttgaaaagtgtggaatgtttaagacttttaacacttcaacatatttcttttccggta |
1689296 |
T |
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| Q |
215 |
agattataagtagacacaaattcttgtcttaatgaatgaaactatttttgtta |
267 |
Q |
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||| ||| | |||||||||||||||| || ||| ||||| |||||||||||| |
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| T |
1689297 |
aga--atatgaagacacaaattcttgtttttatggatgaagctatttttgtta |
1689347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 288 - 387
Target Start/End: Original strand, 1689382 - 1689481
Alignment:
| Q |
288 |
acttttgaaaggtggatgtaaatgttggacgaattgttgtacgattgggatgggttcccctgcaaccattaccagaatcaattcaaatacataatttaga |
387 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
1689382 |
acttttgaaaggtggatgtaaatgttggacggattgttgtaagattgggatgggttcccctacaacccttaccagaatcaattcaaatacataatttaga |
1689481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 468 - 537
Target Start/End: Original strand, 1689564 - 1689633
Alignment:
| Q |
468 |
ttttgttttgaaacaggtttccggatccaatcaaaattcaacaatatctttggccaagactatgcaaact |
537 |
Q |
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|||||||||||||||||||||| |||||||||||||| ||||||||| | ||||||||| |||||||||| |
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| T |
1689564 |
ttttgttttgaaacaggtttccagatccaatcaaaatccaacaatatttgtggccaagattatgcaaact |
1689633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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