View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14335_low_1 (Length: 931)

Name: NF14335_low_1
Description: NF14335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14335_low_1
NF14335_low_1
[»] chr5 (4 HSPs)
chr5 (486-913)||(39674758-39675185)
chr5 (1-294)||(39675407-39675718)
chr5 (317-408)||(39675263-39675353)
chr5 (242-295)||(10865768-10865823)
[»] chr1 (4 HSPs)
chr1 (826-889)||(51044747-51044810)
chr1 (610-663)||(4865830-4865883)
chr1 (615-649)||(40800284-40800318)
chr1 (604-649)||(48607771-48607816)
[»] chr3 (1 HSPs)
chr3 (826-875)||(34626384-34626433)
[»] chr2 (1 HSPs)
chr2 (605-684)||(5164813-5164892)
[»] chr8 (2 HSPs)
chr8 (603-662)||(32648313-32648372)
chr8 (603-644)||(4230554-4230595)
[»] chr6 (2 HSPs)
chr6 (631-693)||(3037595-3037658)
chr6 (604-662)||(33697122-33697180)
[»] chr4 (3 HSPs)
chr4 (609-647)||(32866976-32867014)
chr4 (601-646)||(49233814-49233859)
chr4 (604-649)||(50376671-50376716)


Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 486 - 913
Target Start/End: Complemental strand, 39675185 - 39674758
Alignment:
Q  486 agctgacgtccattgatttatcgaaatatttaactacacagtctattagcgtgagtttttcattcgaaattgtacaacacattgtatccatttttaaata 585  Q
    |||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39675185 agctgacgtccattgatttattaaaatatttaactacacggtctattagcgtgagtttttcattcgaaattgtacaacacattgtatctatttttaaata 39675086  T
Q  586 agctcacacactaaaattgtgagtttaactcagttgatagagacgttgcattatatatgtagggatcggagttcgaactcaagataactcacttattcat 685  Q
    || ||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| | |  |  |||||||||| |||||||||||||||||||    
T  39675085 agttcacacactaaaattgtgagtttaactcaattggttgagacgttgcattatatatgtaagaactgaggttcgaactccagataactcacttattcat 39674986  T
Q  686 cttaaaaaggttaagttatttgaaaggnnnnnnngggtaactgaaataaatttaatagcatgcatggtaattcaattttattactaaactagattcggat 785  Q
    |||||||| ||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39674985 cttaaaaatgttaagttatttgaaaggaaaaaaagggtaactgaaataaatttaatagcatgcatggtaattcaattttattactaaactagattcggat 39674886  T
Q  786 gatacaattactgagttggagggatcggctgcaaccaagtaactaatgaaacaagggattgatccagctacacataaacccttcctcaatgatgaatctc 885  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39674885 gatacaattacttagttggagggatcggctgcaaccaagtaagtaatgaaacaagggattgatccagctacacataaacccttcctcaataatgaatctc 39674786  T
Q  886 ttctaaagaagaaaggaaagatcaccaa 913  Q
    ||||||||||||||||||||||||||||    
T  39674785 ttctaaagaagaaaggaaagatcaccaa 39674758  T

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Target: chr5; HSP #2
Raw Score: 232; E-Value: 1e-127
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 39675718 - 39675407
Alignment:
Q  1 tatttggcgttgaacttccatttctctcttgttaagtgaaggatttgaaatccagaaaatgaaaagaaagaaaggagttcagggagattgattggtaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39675718 tatttggcgttgaacttccatttctctcttgttaagtgaaggatttgaaatccagaaaatgaaaagaaagaaaggagttcagggagattgattggtaatt 39675619  T
Q  101 tgtttgaaacttgaaaaagaaagccaagatttagaatgttatttatagacagacaaagaataagagag----------------tgagaaagtttcatag 184  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||| |||||||||||    
T  39675618 ggtttgaaacttgaaaaagaaagccaagatttagaatgttatttatagacagacaaagaataagagagtgagtgagagtgagagtgaggaagtttcatag 39675519  T
Q  185 ttacatcgtaattaactcgtgcacaacgagggaatattgtagtaatgtcaagataatatattttgtggagatgctaacat--cacatcatcacaagaagc 282  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  39675518 ttagatcgtaattaactcgtgaacaacgagggaatattgtagtaatgtcaagataatatattttgtggagatgctaacatcacacatcatcacaagaagc 39675419  T
Q  283 ctttacttgact 294  Q
    ||||||||||||    
T  39675418 ctttacttgact 39675407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 317 - 408
Target Start/End: Complemental strand, 39675353 - 39675263
Alignment:
Q  317 tgtgcacagactaattaagttttaaaaaactagtgttattnnnnnnnncaaatttgaaagaaacaaagttttaaataattcgttgaacgtaa 408  Q
    |||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||| ||||||||||    
T  39675353 tgtgcacagactaattaagttttaaaaaactagtgttat-aaaaaaaacaaatttgaaagaaacaaagttttaaataattcattgaacgtaa 39675263  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 10865823 - 10865768
Alignment:
Q  242 atattttgtggaga--tgctaacatcacatcatcacaagaagcctttacttgacta 295  Q
    ||||||||||||||  ||||||||| |||||||||| ||||||||||| |||||||    
T  10865823 atattttgtggagagatgctaacattacatcatcactagaagcctttatttgacta 10865768  T

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Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 826 - 889
Target Start/End: Original strand, 51044747 - 51044810
Alignment:
Q  826 aactaatgaaacaagggattgatccagctacacataaacccttcctcaatgatgaatctcttct 889  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||    
T  51044747 aactaatgaaacaagggattgatccagctacacataaacccttgatcaataatgaatctcttct 51044810  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 610 - 663
Target Start/End: Complemental strand, 4865883 - 4865830
Alignment:
Q  610 ttaactcagttgatagagacgttgcattatatatgtagggatcggagttcgaac 663  Q
    |||||||||||| ||| ||| |||||| |||||||||||| |||||||||||||    
T  4865883 ttaactcagttggtagggacattgcataatatatgtaggggtcggagttcgaac 4865830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 615 - 649
Target Start/End: Complemental strand, 40800318 - 40800284
Alignment:
Q  615 tcagttgatagagacgttgcattatatatgtaggg 649  Q
    ||||||||||||||| |||||||||||||||||||    
T  40800318 tcagttgatagagacattgcattatatatgtaggg 40800284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 604 - 649
Target Start/End: Complemental strand, 48607816 - 48607771
Alignment:
Q  604 gtgagtttaactcagttgatagagacgttgcattatatatgtaggg 649  Q
    |||||||||||||||||||||| ||  ||||||| |||||||||||    
T  48607816 gtgagtttaactcagttgatagggatattgcattttatatgtaggg 48607771  T

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Target: chr3 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 826 - 875
Target Start/End: Complemental strand, 34626433 - 34626384
Alignment:
Q  826 aactaatgaaacaagggattgatccagctacacataaacccttcctcaat 875  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34626433 aactaatgaaacaagggattgatccagctacacataaacccttcatcaat 34626384  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 605 - 684
Target Start/End: Original strand, 5164813 - 5164892
Alignment:
Q  605 tgagtttaactcagttgatagagacgttgcattatatatgtagggatcggagttcgaactcaagataactcacttattca 684  Q
    ||||||||||| ||||||||||||  ||||||||||||||||||| ||||| |||||||   ||| | ||||||||||||    
T  5164813 tgagtttaacttagttgatagagatattgcattatatatgtaggggtcggaattcgaaccttagacatctcacttattca 5164892  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 603 - 662
Target Start/End: Complemental strand, 32648372 - 32648313
Alignment:
Q  603 tgtgagtttaactcagttgatagagacgttgcattatatatgtagggatcggagttcgaa 662  Q
    ||||||||||||||| ||| | ||||||||| || |||||||||| |||||| |||||||    
T  32648372 tgtgagtttaactcaattgtttgagacgttgtataatatatgtagagatcggggttcgaa 32648313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 603 - 644
Target Start/End: Original strand, 4230554 - 4230595
Alignment:
Q  603 tgtgagtttaactcagttgatagagacgttgcattatatatg 644  Q
    |||||||||||||| ||||||| |||| ||||||||||||||    
T  4230554 tgtgagtttaactctgttgataaagacattgcattatatatg 4230595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 693
Target Start/End: Complemental strand, 3037658 - 3037595
Alignment:
Q  631 ttgcattat-atatgtagggatcggagttcgaactcaagataactcacttattcatcttaaaaa 693  Q
    ||||||||| ||||||||||| ||| |||||||||  ||| ||| |||||||||||||||||||    
T  3037658 ttgcattatgatatgtagggagcggtgttcgaacttcagacaacccacttattcatcttaaaaa 3037595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 604 - 662
Target Start/End: Complemental strand, 33697180 - 33697122
Alignment:
Q  604 gtgagtttaactcagttgatagagacgttgcattatatatgtagggatcggagttcgaa 662  Q
    ||||| |||||||||||||||| ||  ||||||| |||||| |||| ||||||||||||    
T  33697180 gtgagcttaactcagttgatagggatattgcattttatatgcaggggtcggagttcgaa 33697122  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 609 - 647
Target Start/End: Original strand, 32866976 - 32867014
Alignment:
Q  609 tttaactcagttgatagagacgttgcattatatatgtag 647  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  32866976 tttaactcaattgatagagacgttgcataatatatgtag 32867014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 601 - 646
Target Start/End: Complemental strand, 49233859 - 49233814
Alignment:
Q  601 attgtgagtttaactcagttgatagagacgttgcattatatatgta 646  Q
    ||||| |||||||||||||||||||||||  ||||| |||||||||    
T  49233859 attgtaagtttaactcagttgatagagacaatgcataatatatgta 49233814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 604 - 649
Target Start/End: Complemental strand, 50376716 - 50376671
Alignment:
Q  604 gtgagtttaactcagttgatagagacgttgcattatatatgtaggg 649  Q
    |||||||||||||||||| ||||||| |||||| ||||||| ||||    
T  50376716 gtgagtttaactcagttggtagagacattgcataatatatgcaggg 50376671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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