View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14335_low_12 (Length: 542)
Name: NF14335_low_12
Description: NF14335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14335_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 147 - 517
Target Start/End: Original strand, 3679507 - 3679869
Alignment:
| Q |
147 |
gtaaaaccaagattctcatttgaatctttacaatgaagctcgatagatnnnnnnnnttctttgataaatgaatttgaattctactccaaattaagttcaa |
246 |
Q |
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| T |
3679507 |
gtaaaaccaagattctcatttgaatctttacaatgaagctcgatagataaaaaaaattctttgataaatgaatttgaattctactccaaattaagttcaa |
3679606 |
T |
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| Q |
247 |
acatagcatcagagtgaaagcaactctaggacaagtagtgctcagaatagaaaattataagtacgagcaactaagtaacacaaataaaaggctaaaagcc |
346 |
Q |
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| T |
3679607 |
acatagcatcagagtgaaagcaactctagga--------gctaagaatagaaaattataagtacgagcaaataagtaacacaaataaaaggctaaaagcc |
3679698 |
T |
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| Q |
347 |
taaaacaagaggatgctaagacgaaaaagaagatccaaaacaacaaagttgattagacaaccattgatgtaaattataagagaaacttctaaacttagcc |
446 |
Q |
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| T |
3679699 |
taaaacaagaggatgttaagacgaaaaagaagatccaaaacaacaaagttgattagacaaccattgatgtaaattataagagaaacttctaaacttagcc |
3679798 |
T |
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| Q |
447 |
ttaatccgccactaaattaaatcttcatactatttaaattttgagatgactaaagaatctattgttgcgct |
517 |
Q |
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| T |
3679799 |
ttattccgccactaaattaaatctacatactatttaaattttgagatgactaaagaatctattgttgcgct |
3679869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 3679337 - 3679494
Alignment:
| Q |
1 |
ccataattttttcagcacccaagtaaatcccataatagaattgattagcattattagtatcatcaactaactgcataagtttgtcacatgactcaaataa |
100 |
Q |
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| T |
3679337 |
ccataattttttcagcacccaagtaaatcccataatagaattgattagcattattagtatcatcaactaactgcataagtttgtcacatgactcaaataa |
3679436 |
T |
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| Q |
101 |
gttgttgtcaaatacttcataaacagtcttattaagataatcaacagtaaaaccaaga |
158 |
Q |
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| T |
3679437 |
gttgttgtcaaatacttcataaacagtcttattaagataatcaacattaaaaccaaga |
3679494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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