View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14335_low_13 (Length: 537)
Name: NF14335_low_13
Description: NF14335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14335_low_13 |
 | |
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| [»] chr2 (8 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 22 - 537
Target Start/End: Complemental strand, 33081669 - 33081160
Alignment:
| Q |
22 |
aagttgtagtttcgctcatgccgtgcatctaaaggagctgtcactgtggttccaaacacaagcttattcagtcctaattggcatgcattcagttgttaaa |
121 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
33081669 |
aagttatagtttcgctcaagccgtgcatctaaaggagctgtcactgtggttccaaacacaagcttattcagtcctaattggcatgcattcagtcgttaaa |
33081570 |
T |
|
| Q |
122 |
acaacaacaggttgatctttatctttgtctcctgagagattcagtttagtccatttcgcatatcttgtcaaaagtaagagtgtcccagtttgacatgcca |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33081569 |
acaacaacaggttgatctttatctttgtctcctgagagattcagtttagtccatttggcatatcttgtcaaaagtaagagtgtcccagtttgacatgcca |
33081470 |
T |
|
| Q |
222 |
gcccacaaatcagaccaatccataaaccctatatcat-attaaaaagcacaatgattnnnnnnngaatacaaaataaagagtattaaggatgaggttcag |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||| |||||| |
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|
| T |
33081469 |
gcccacaaatcagaccaatccataaaccctatatcataattaaaaaacacaatgattaaaaaaagaatacaaaataaagagtattacggatga------- |
33081377 |
T |
|
| Q |
321 |
ggttcagttcctgctgctaataaattgaccattaagattttatctataaaatgacaacatatttaaattatgattagtgaaataactcttttaccttata |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33081376 |
ggttcagttcctgctgctaataaattgaccattaacattttatctataaaatgacaacatatttaaattatgatttgtgaaataactcttttaccttata |
33081277 |
T |
|
| Q |
421 |
tttcaaatcggtcttaaatccaaggatacatgaaattggtaaaccaattagataaaaagttgcaaggttgacgtaaacagcaacgtgctgccaaccgcat |
520 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33081276 |
tttcaaattggtcttaaatccaaggatacatgaaattggtaaaccaattagataaaaagttgcaaggttgacgtaaacagcaacgtgctgccaaccgcat |
33081177 |
T |
|
| Q |
521 |
gctctaaccacccctgc |
537 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
33081176 |
gctctaaccacccctgc |
33081160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 22 - 537
Target Start/End: Complemental strand, 33071965 - 33071468
Alignment:
| Q |
22 |
aagttgtagtttcgctcatgccgtgcatctaaaggagctgtcactgtggttccaaacacaagcttattcagtcctaattggcatgcattcagttgttaaa |
121 |
Q |
| |
|
||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33071965 |
aagttatagtttcgctcacgccgtgcatc-aaaggagctgtcactgtggttccaaacacaagcttattcagtcctaattggcatgcattcagtcgttaaa |
33071867 |
T |
|
| Q |
122 |
acaacaacaggttgatctttatctttgtctcctgagagattcagtttagtccatttcgcatatcttgtcaaaagtaagagtgtcccagtttgacatgcca |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33071866 |
acaacaacaggttgatctttatctttgtctcctgagagattcagtttagtccattttgcatatcttgtcaaaagtaagagtgtcccagtttgacatgcca |
33071767 |
T |
|
| Q |
222 |
gcccacaaatcagaccaatccataaaccctatatcat-attaaaaagcacaatgattnnnnnnngaatacaaaataaagagtattaaggatgaggttcag |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33071766 |
gcccacaaatcagaccaatccataaaccctatatcataattaaaaagcacaatgattaaaaaaagaatacaaaataaagagtatta-------------- |
33071681 |
T |
|
| Q |
321 |
ggttcagttcctgctgctaataaattgaccattaagattttatctataaaatgacaacatatttaaattatga-ttagtgaaataactcttttaccttat |
419 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||| | ||||||||||||||||||||||| ||| || ||||||||| | ||||||||||| |
|
|
| T |
33071680 |
-----agttcctactgctaataaattgaccattaacattttatttgtaaaatgacaacatatttaaattgtgattttgtgaaataatttttttaccttat |
33071586 |
T |
|
| Q |
420 |
atttcaaatcggtcttaaatccaaggatacatgaaattggtaaaccaattagataaaaagttgcaaggttgacgtaaacagcaacgtgctgccaaccgca |
519 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33071585 |
attgcaaattggtcttaaatccaaggatacatgaaattggtaaaccaatgaaataaaaagttgcaaggttgacgtaaacagcaacttgctgccaaccgca |
33071486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 97 - 537
Target Start/End: Complemental strand, 33090262 - 33089808
Alignment:
| Q |
97 |
aattggcatgcattcagttgttaaaacaacaacaggttgatctttatctttgtctcctgagagattcagtttagtccatttcgcatatcttgtcaaaagt |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33090262 |
aattggcatgcattcagttgttaaaacaacaacaggttgatctttacctttgtctcctgagagattcagtttagtccatttggcatatcttgtcaaaagt |
33090163 |
T |
|
| Q |
197 |
aagagtgtcccagtttgacatgccagcccacaaatcagaccaatccataaaccctatatcat-attaaaaagcacaatgattnnnnnnngaatacaaaat |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| | || |||||||||| | |||||||| |
|
|
| T |
33090162 |
aagagtgtcccagtttgacatgccagcccacaaatcagaccaatccataaaccctaaaacataattcataaacacaatgatta-------attacaaaat |
33090070 |
T |
|
| Q |
296 |
aaagagtattaaggatgaggttcagggttcagttcctgctgc-------------------taataaattgaccattaagattttatctataaaatgaca |
376 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| ||| |||| ||||||||| |||||||| | ||||||||||||| |||| |
|
|
| T |
33090069 |
aaagagtattaagaatgaggttcatggttcagtccctactgctaataaatactttttcccataataaattaaccattaaca-tttatctataaaaagaca |
33089971 |
T |
|
| Q |
377 |
acatatttaaattatga-ttagtg-aaataactcttttaccttatatttcaaatcggtcttaaatccaaggatacatgaaattggtaaaccaattagata |
474 |
Q |
| |
|
||| ||||| ||||| | || ||| ||| || ||||||||||| |||| ||||| ||||||||||||||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
33089970 |
acacatttacattataattttgtgaaaaaaaatcttttaccttgtattccaaattggtcttaaatccaaggagacatgaaatgggtaaaccaatgagata |
33089871 |
T |
|
| Q |
475 |
aaaagttgcaaggttgacgtaaacagcaacgtgctgccaaccgcatgctctaaccacccctgc |
537 |
Q |
| |
|
|||||||||||||||||| |||||| | | |||||||||||| ||| |||||||||||||||| |
|
|
| T |
33089870 |
aaaagttgcaaggttgacataaacaactaagtgctgccaaccacatcctctaaccacccctgc |
33089808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 97 - 537
Target Start/End: Complemental strand, 33097758 - 33097304
Alignment:
| Q |
97 |
aattggcatgcattcagttgttaaaacaacaacaggttgatctttatctttgtctcctgagagattcagtttagtccatttcgcatatcttgtcaaaagt |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33097758 |
aattggcatgcattcagttgttaaaacaacaacaggttgatctttacctttgtctcctgagagattcagtttagtccatttggcatatcttgtcaaaagt |
33097659 |
T |
|
| Q |
197 |
aagagtgtcccagtttgacatgccagcccacaaatcagaccaatccataaaccctatatcat-attaaaaagcacaatgattnnnnnnngaatacaaaat |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| | || |||||||||| | |||||||| |
|
|
| T |
33097658 |
aagagtgtcccagtttgacatgccagcccacaaatcagaccaatccataaaccctaaaacataattcataaacacaatgatta-------attacaaaat |
33097566 |
T |
|
| Q |
296 |
aaagagtattaaggatgaggttcagggttcagttcctgctgc-------------------taataaattgaccattaagattttatctataaaatgaca |
376 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| ||| |||| ||||||||| |||||||| | ||||||||||||| |||| |
|
|
| T |
33097565 |
aaagagtattaagaatgaggttcatggttcagtccctactgctaataaatactttttcccataataaattaaccattaaca-tttatctataaaaagaca |
33097467 |
T |
|
| Q |
377 |
acatatttaaattatga-ttagtg-aaataactcttttaccttatatttcaaatcggtcttaaatccaaggatacatgaaattggtaaaccaattagata |
474 |
Q |
| |
|
||| ||||| ||||| | || ||| ||| || ||||||||||| |||| ||||| ||||||||||||||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
33097466 |
acacatttacattataattttgtgaaaaaaaatcttttaccttgtattccaaattggtcttaaatccaaggagacatgaaatgggtaaaccaatgagata |
33097367 |
T |
|
| Q |
475 |
aaaagttgcaaggttgacgtaaacagcaacgtgctgccaaccgcatgctctaaccacccctgc |
537 |
Q |
| |
|
|||||||||||||||||| |||||| | | |||||||||||| ||| |||||||||||||||| |
|
|
| T |
33097366 |
aaaagttgcaaggttgacataaacaactaagtgctgccaaccacatcctctaaccacccctgc |
33097304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 30 - 259
Target Start/End: Complemental strand, 33064714 - 33064486
Alignment:
| Q |
30 |
gtttcgctcatgccgtgcatctaaaggagctgtcactgtggttccaaacacaagcttattcagtcctaattggcatgcattcagttgttaaaacaacaac |
129 |
Q |
| |
|
|||||||||| ||||||||||||| |||||| ||| |||||||||||||||| ||||| |||||||||||||| ||||| |||||||||| |||||| |
|
|
| T |
33064714 |
gtttcgctcacaccgtgcatctaaatgagctgccacggtggttccaaacacaaacttatatagtcctaattggcaggcattaagttgttaaa-caacaat |
33064616 |
T |
|
| Q |
130 |
aggttgatctttatctttgtctcctgagagattcagtttagtccatttcgcatatcttgtcaaaagtaagagtgtcccagtttgacatgccagcccacaa |
229 |
Q |
| |
|
||||| ||||||||||||| || ||||||||||||||||||||||| ||| ||||||||||| ||||||| ||||||||||||| ||| ||||| |
|
|
| T |
33064615 |
tggttggcctttatctttgtcgcccgagagattcagtttagtccatttgacatgccttgtcaaaagcaagagtgccccagtttgacataccaatccacat |
33064516 |
T |
|
| Q |
230 |
atcagaccaatccataaaccctatatcata |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
33064515 |
atcagaccaatccataaaccctatatcata |
33064486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 110 - 259
Target Start/End: Complemental strand, 33050394 - 33050246
Alignment:
| Q |
110 |
tcagttgttaaaacaacaacaggttgatctttatctttgtctcctgagagattcagtttagtccatttcgcatatcttgtcaaaagtaagagtgtcccag |
209 |
Q |
| |
|
|||||||||||| |||||| |||||| |||||||||||||| ||||||||||| |||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
33050394 |
tcagttgttaaa-caacaataggttggtctttatctttgtcccctgagagattaagtttagtccatttggcatgccttgtcaaaagtaagagtgtcccaa |
33050296 |
T |
|
| Q |
210 |
tttgacatgccagcccacaaatcagaccaatccataaaccctatatcata |
259 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33050295 |
tttgacacaccagcccacaaatcagaccaatccataaaccctatatcata |
33050246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 409 - 537
Target Start/End: Complemental strand, 33063846 - 33063718
Alignment:
| Q |
409 |
ttttaccttatatttcaaatcggtcttaaatccaaggatacatgaaattggtaaaccaattagataaaaagttgcaaggttgacgtaaacagcaacgtgc |
508 |
Q |
| |
|
|||||||||||| | ||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||| | |||| |
|
|
| T |
33063846 |
ttttaccttatactgcaaattggtcttaaatccaaggagacatgaaattggtaaaccaatgagataaaaagttgcaaggttgacataaacagctaagtgc |
33063747 |
T |
|
| Q |
509 |
tgccaaccgcatgctctaaccacccctgc |
537 |
Q |
| |
|
|||||||| ||| ||||| |||||||||| |
|
|
| T |
33063746 |
tgccaaccacatcctctagccacccctgc |
33063718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 412 - 537
Target Start/End: Complemental strand, 33049874 - 33049749
Alignment:
| Q |
412 |
taccttatatttcaaatcggtcttaaatccaaggatacatgaaattggtaaaccaattagataaaaagttgcaaggttgacgtaaacagcaacgtgctgc |
511 |
Q |
| |
|
||||||||| | ||||| ||||||||||||||||| | ||||||||||||||||||| ||||||||||| ||||||||||| |||||| | | || |||| |
|
|
| T |
33049874 |
taccttatagtgcaaattggtcttaaatccaaggagatatgaaattggtaaaccaatgagataaaaagtggcaaggttgacataaacaactaagttctgc |
33049775 |
T |
|
| Q |
512 |
caaccgcatgctctaaccacccctgc |
537 |
Q |
| |
|
||||| ||| ||||||| |||||||| |
|
|
| T |
33049774 |
caaccacatcctctaactacccctgc |
33049749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 18487325 - 18487228
Alignment:
| Q |
120 |
aaacaacaacaggttgatctttatctttgtctcctgagagattcagtttagtccatttcgcatatcttgtcaaaagtaagagtgtcccagtttgacat |
217 |
Q |
| |
|
|||||| || |||||| |||||||||||||| |||| ||||| |||||||||||||| |||| |||||||||| ||||| ||||| | |||||||| |
|
|
| T |
18487325 |
aaacaataataggttggtctttatctttgtccactgatagattaagtttagtccatttggcatgccttgtcaaaaataagattgtcctaatttgacat |
18487228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 533
Target Start/End: Complemental strand, 18486290 - 18486219
Alignment:
| Q |
462 |
aaccaattagataaaaagttgcaaggttgacgtaaacagcaacgtgctgccaaccgcatgctctaaccaccc |
533 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| |||||| | | |||| ||||||| ||| || ||||||||| |
|
|
| T |
18486290 |
aaccaatgagataaaaagtggcaaggttgacataaacaactaagtgccgccaaccacatcctttaaccaccc |
18486219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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