View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14335_low_14 (Length: 509)
Name: NF14335_low_14
Description: NF14335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14335_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 246 - 496
Target Start/End: Complemental strand, 11296408 - 11296147
Alignment:
| Q |
246 |
catattgatccaccattggtgttaattaaccaatgaggtgcattc-----------aggatgacacgttccctatgcatagcatttatcattattttgct |
334 |
Q |
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| T |
11296408 |
catattgatccaccgttggtgttaattaaccaatgaggtgctttcgtgaaggattaaggatgacacgttccttatgcatagcatttatcattattttgct |
11296309 |
T |
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| Q |
335 |
agtgttcaatttccattgttaatgcacagtgttgacttagtaattgtcttctcattaggtgctttattgatgtgtcaccaaacctcttatacttccggca |
434 |
Q |
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| T |
11296308 |
agcattccatttccattgttaatgcacagtgttgacttagtcattgtcttctcattaggtgctttattgatctgtcaccaaacctcttatacttccggca |
11296209 |
T |
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| Q |
435 |
ataacattaacactcaataatttatagagttgacttataatgtaacacaatttccaagtgat |
496 |
Q |
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| T |
11296208 |
ataacattaacgctcaataatttatagagttgacttataatgtaacacaaattccaagtgat |
11296147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 11296476 - 11296438
Alignment:
| Q |
17 |
aaatatagcattaatttgttatgtaaaatatgttactat |
55 |
Q |
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| T |
11296476 |
aaatatagcattaatttgttatgtaaaatatgttactat |
11296438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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