View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14335_low_15 (Length: 479)
Name: NF14335_low_15
Description: NF14335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14335_low_15 |
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| [»] scaffold0198 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 16 - 462
Target Start/End: Original strand, 20682968 - 20683401
Alignment:
| Q |
16 |
attcttcaaagtcgcgctaaatttagga--caaaaacatatttaactctaattttaattagttgtttaaaatgtcttcaatcctatagttaaatggcatg |
113 |
Q |
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| T |
20682968 |
attctttaaaatcgcgctaaatgtagggaccaataacatatttaactctaattttaattagttgtttaaaatgtcttcaatcctatagttaaatggcatg |
20683067 |
T |
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| Q |
114 |
tgtatgttgattaagtgacttcccctaatccatgattagaggattaatgatcttgagtgaaaactttgtgtttatcttgcatctttatggtaattttctt |
213 |
Q |
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| T |
20683068 |
tgtatgttgattaagtgacttcccttaatccatgattagaggattaatgatcttgagtgaaaactttgtgtttagctagcatctttatggtaattttctt |
20683167 |
T |
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| Q |
214 |
ggacctatcgagactaaagtcttcggtagataagcattttttgaggaagaatgcgcaagtaagaccggtggtcccattgccggatgagataggggcgttt |
313 |
Q |
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| T |
20683168 |
ggacctatcgagactaaagtcttcggtagataagtattttttgaggaagaatgcgcaagtaacaccggtggtcccattgc---------------cgttt |
20683252 |
T |
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| Q |
314 |
tgagatttttattattcaaggagatttgttaatttactacatatttttatttaacaagtatgttccttgaggacaagcatctatttaggtttggagctgt |
413 |
Q |
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| T |
20683253 |
tgagatttttattattcaaggagatttgttaatttactgcatatttttatttaacaagtatgttctttgaggacaagcatctatttaggtttggagttat |
20683352 |
T |
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| Q |
414 |
gacaacagtctgtcgtgccatacttttagtgtattttaggagtcgtttg |
462 |
Q |
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| T |
20683353 |
gacaacagtctgtcgtgccatatttttagtgtattttaggagtggtttg |
20683401 |
T |
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Target: scaffold0198 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0198
Description:
Target: scaffold0198; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 387
Target Start/End: Original strand, 3932 - 3992
Alignment:
| Q |
327 |
attcaaggagatttgttaatttactacatatttttatttaacaagtatgttccttgaggac |
387 |
Q |
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| T |
3932 |
attcaaggaggtttgttaatttattgcaaatatttattttccaagaatgttccttgaggac |
3992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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