View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14335_low_16 (Length: 461)
Name: NF14335_low_16
Description: NF14335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14335_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 16 - 443
Target Start/End: Original strand, 39790279 - 39790704
Alignment:
| Q |
16 |
ataattctatggattctgaaaggaatgatggagataataataatcatggggtggaacaatattacaagaaaatggttcagcaaaatccaggaaatccttt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39790279 |
ataattctatggattctgaaaggaatgatggagataataataatcatggggtggaacaatattacaagaaaatggttcagcaaaatccaggaaatccttt |
39790378 |
T |
|
| Q |
116 |
gttcttgaggaattatgctcaatttttgtatcaggtaacttctatttccttctgtttgaatnnnnnnnttaagttcttacaacacaatcacttataacta |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39790379 |
gttcttgaggaattatgctcaatttttgtatcaggtaacttctatttccttctgtttgaataaaaaaattaagttcttacaacacaatcacttataacta |
39790478 |
T |
|
| Q |
216 |
agtgcttatacataagttgttnnnnnnnnnnnnnnaaaatgaatcaaactgttttaataaaagttatcctagagagctaatccnnnnnnnngctgaaaac |
315 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39790479 |
agtgcttatacataagttgtt--tttatatatataaaaataaatcaaactgttttaataaaagttatcctagagagctaatccaaaaaaaagctgaaaac |
39790576 |
T |
|
| Q |
316 |
aacttatagaatgtttctataagtcaacacacaaacttgatttgttagtggatatactatagtactgttggcgatgaatacaaaattgatgttgttttga |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39790577 |
aacttatagaatgtttctataagtcaacacacaaacttgatttgttagtggatatactatagtactgttggcgatgaatacaaaattgatgttgttttga |
39790676 |
T |
|
| Q |
416 |
tttgacagtgcaaacaagaccttgaagg |
443 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
39790677 |
tttgacagtgcaaacaagaccttgaagg |
39790704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 39411506 - 39411372
Alignment:
| Q |
16 |
ataattctatggattctgaaaggaatgatggagataataataatcatggggtggaacaatattacaagaaaatggttcagcaaaatccaggaaatccttt |
115 |
Q |
| |
|
||||||| |||| ||||| | ||||||||||||||| |||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
39411506 |
ataattccatgggttctggagggaatgatggagatagtaat---catggggtggaagaatattacaagaaaatggttcaacaaaatccaggaaatccatt |
39411410 |
T |
|
| Q |
116 |
gttcttgaggaattatgctcaatttttgtatcaggtaa |
153 |
Q |
| |
|
||| |||||||||||||||| ||| |||||||||||| |
|
|
| T |
39411409 |
gtttctgaggaattatgctcagtttctgtatcaggtaa |
39411372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 391 - 443
Target Start/End: Complemental strand, 39411188 - 39411134
Alignment:
| Q |
391 |
gaatacaaaattgatgttgttttga--tttgacagtgcaaacaagaccttgaagg |
443 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
39411188 |
gaatgcaaaattgatgttgttttgagttttgacagtgcaaacaagaccgtgaagg |
39411134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University