View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14335_low_17 (Length: 454)
Name: NF14335_low_17
Description: NF14335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14335_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 377; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 1892144 - 1891689
Alignment:
| Q |
1 |
atcctacctgaaaaatgtagcgtagcgatagcagaaagaagtcaattgttagcagaatgccaccaatcgcccaacttgaatccgctgccatgagaaagcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1892144 |
atcctacctgaaaaatgtagcgtagcgatagcagaaagaagtcaattgttagcagaatgccaccaatcgcccaacttgaatccactgccatgagaaagcc |
1892045 |
T |
|
| Q |
101 |
agctggttgatgaagtgatgaagaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctactaccttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1892044 |
agctggttgatgaagtgatgaagaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctactaccttt |
1891945 |
T |
|
| Q |
201 |
gcattgctacttctactctttgcggctaacttttccatccttaattgcaatgataacaagaaaacaaataagtggactataaactaacatgttcatatag |
300 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1891944 |
gcattgctacttctactctttgcagctaacttttccatccttaattgcaatgataacaagaaaacaaataagtggactataaactaacatgttcatatag |
1891845 |
T |
|
| Q |
301 |
aagttaatcaaatcactgcatgaaataacatcataaaatttta------------------agattaaaatgaatcttcactcaaaattaaataactttg |
382 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||| | |
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|
| T |
1891844 |
aagttaatcaaatcactgcatgaaataacttcataaaattttaactcatagtttttgttagagattaaaatgagtcttcactcaaaattaaataacttcg |
1891745 |
T |
|
| Q |
383 |
tttaaaatgataagaatctgaaaaactcaaatatactaattatcaaacctgaaaat |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1891744 |
tttaaaatgataagaatctgaaaaactcaaatatactaattatcaaacctgaaaat |
1891689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 40 - 287
Target Start/End: Complemental strand, 1903035 - 1902788
Alignment:
| Q |
40 |
agtcaattgttagcagaatgccaccaatcgcccaacttgaatccgctgccatgagaaagccagctggttgatgaagtgatgaagaattcatgatcgacgg |
139 |
Q |
| |
|
|||||| | |||| ||||||||| |||| ||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1903035 |
agtcaaatattaggagaatgccagcaatggcccaacttgaatccactgacttgagaaagccagctggttgatgaagtgatgaagaattcatgatcgacgg |
1902936 |
T |
|
| Q |
140 |
tcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctactacctttgcattgctacttctactctttgcggctaacttttccatc |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
1902935 |
tcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctactacctttgcattgctacttctactctttgcagctaacttttccatc |
1902836 |
T |
|
| Q |
240 |
cttaattgcaatgataacaagaaaacaaataagtggactataaactaa |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1902835 |
cttaattgcaatgataacaagaaaacaaataagtggactataaactaa |
1902788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 40 - 287
Target Start/End: Complemental strand, 1907268 - 1907021
Alignment:
| Q |
40 |
agtcaattgttagcagaatgccaccaatcgcccaacttgaatccgctgccatgagaaagccagctggttgatgaagtgatgaagaattcatgatcgacgg |
139 |
Q |
| |
|
|||||| | |||| ||||||||| |||| ||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1907268 |
agtcaaatattaggagaatgccagcaatggcccaacttgaatccactgacttgagaaagccagctggttgatgaagtgatgaagaattcatgatcgacgg |
1907169 |
T |
|
| Q |
140 |
tcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctactacctttgcattgctacttctactctttgcggctaacttttccatc |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
1907168 |
tcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctactacctttgcattgctacttctactctttgcagctaacttttccatc |
1907069 |
T |
|
| Q |
240 |
cttaattgcaatgataacaagaaaacaaataagtggactataaactaa |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1907068 |
cttaattgcaatgataacaagaaaacaaataagtggactataaactaa |
1907021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 3 - 287
Target Start/End: Complemental strand, 1912964 - 1912680
Alignment:
| Q |
3 |
cctacctgaaaaatgtagcgtagcgatagcagaaagaagtcaattgttagcagaatgccaccaatcgcccaacttgaatccgctgccatgagaaagccag |
102 |
Q |
| |
|
|||||||| |||||||| | ||| || | |||||| |||||||||| |||||||| ||| |||| ||||||||||||||| | | | |||||||| || |
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|
| T |
1912964 |
cctacctgtaaaatgtaccatagtgaaaccagaaaatagtcaattgtcagcagaataccagcaatggcccaacttgaatccacagacttgagaaagtcaa |
1912865 |
T |
|
| Q |
103 |
ctggttgatgaagtgatgaagaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctactacctttgc |
202 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||| || |
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|
| T |
1912864 |
ttggttgatgaagtgatgaggaattcatgatggattgtcctttgtagaaagtcaacacaaaagcacctgctattgatattatgcttccaattaccttagc |
1912765 |
T |
|
| Q |
203 |
attgctacttctactctttgcggctaacttttccatccttaattgcaatgataacaagaaaacaaataagtggactataaactaa |
287 |
Q |
| |
|
||| || |||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||| |||| ||| ||||| |
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|
| T |
1912764 |
attactgcttctactctttgcagctaacttttccattcttaattgcaatgataacaggaaaacaaataaggggacaatagactaa |
1912680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 45 - 277
Target Start/End: Complemental strand, 1879745 - 1879513
Alignment:
| Q |
45 |
attgttagcagaatgccaccaatcgcccaacttgaatccgctgccatgagaaagccagctggttgatgaagtgatgaagaattcatgatcgacggtcctt |
144 |
Q |
| |
|
|||||||| ||||||||| ||| ||||||||||||||| ||| | |||||||| || |||||||||||||| | || ||||||||||| || ||||||| |
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|
| T |
1879745 |
attgttagaagaatgccagcaaaagcccaacttgaatcctctgacttgagaaagtcaactggttgatgaagtaaagatgaattcatgatggatggtcctt |
1879646 |
T |
|
| Q |
145 |
tgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctactacctttgcattgctacttctactctttgcggctaacttttccatccttaa |
244 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||| | |||||| ||||| ||||||||||||||||| |||||||||||||||||||| |
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|
| T |
1879645 |
tgtagaaagtcaacacaaaagcacctgctattgagattatgcttccaattaccttagcattactacttctactctttgcagctaacttttccatccttaa |
1879546 |
T |
|
| Q |
245 |
ttgcaatgataacaagaaaacaaataagtggac |
277 |
Q |
| |
|
|||||||||||| | ||||||||||||||||| |
|
|
| T |
1879545 |
ttgcaatgataagagcaaaacaaataagtggac |
1879513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 70 - 277
Target Start/End: Complemental strand, 1897512 - 1897305
Alignment:
| Q |
70 |
cccaacttgaatccgctgccatgagaaagccagctggttgatgaagtgatgaagaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacc |
169 |
Q |
| |
|
||||||||||||| ||| | ||||||||||| || ||||||||||||||| |||||||||| | ||||||||||||||||| | |||||||||||| |
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|
| T |
1897512 |
cccaacttgaatctactgacttgagaaagccaattgattgatgaagtgatgagaaattcatgatgggtggtcctttgtagaaagttaacacaaaagcacc |
1897413 |
T |
|
| Q |
170 |
tgctattgatattatgcttcctactacctttgcattgctacttctactctttgcggctaacttttccatccttaattgcaatgataacaagaaaacaaat |
269 |
Q |
| |
|
||||||||||||||||||||| | |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| | |||| |||| |
|
|
| T |
1897412 |
tgctattgatattatgcttcccattaccttggcattactacttctactctttgcagctaacttttccatccttaattgcaatgataagaggaaacaaaat |
1897313 |
T |
|
| Q |
270 |
aagtggac |
277 |
Q |
| |
|
|||||||| |
|
|
| T |
1897312 |
aagtggac |
1897305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 42 - 256
Target Start/End: Complemental strand, 1886336 - 1886122
Alignment:
| Q |
42 |
tcaattgttagcagaatgccaccaatcgcccaacttgaatccgctgccatgagaaagccagctggttgatgaagtgatgaagaattcatgatcgacggtc |
141 |
Q |
| |
|
|||| |||||| ||||||||| |||| ||||||||||||| ||| | ||||||||||| |||||||||||| ||||| |||| |||||| || |||| |
|
|
| T |
1886336 |
tcaactgttagaagaatgccagcaatgacccaacttgaatcaactgacttgagaaagccaattggttgatgaagagatgaggaatgcatgatggatggtc |
1886237 |
T |
|
| Q |
142 |
ctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctactacctttgcattgctacttctactctttgcggctaacttttccatcct |
241 |
Q |
| |
|
||||||| ||||||| ||||||||| ||| ||||||| |||||||| || | || ||| ||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1886236 |
ctttgtaaaaagtcaacacaaaagctcctactattgagattatgctccccagtatcttagcattactacttctactctttgcagctaacttttccatcct |
1886137 |
T |
|
| Q |
242 |
taattgcaatgataa |
256 |
Q |
| |
|
||||| |||| |||| |
|
|
| T |
1886136 |
taattacaattataa |
1886122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 91 - 183
Target Start/End: Original strand, 27039545 - 27039637
Alignment:
| Q |
91 |
tgagaaagccagctggttgatgaagtgatgaagaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatatta |
183 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||| || ||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
27039545 |
tgagaaagccaattggttgatgaagtgatgaggaattcatgatggatggtcctttgtagaaagtcaacacaaaagcacctgctattgagatta |
27039637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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