View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14335_low_18 (Length: 437)
Name: NF14335_low_18
Description: NF14335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14335_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 17 - 425
Target Start/End: Original strand, 31966231 - 31966635
Alignment:
| Q |
17 |
aggaacttaccttctcgtacatcaaatgtgcacttatatttatatgggttaagtctcatgttgtacttttaagcttgttcaaagacttacttctgatgat |
116 |
Q |
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| T |
31966231 |
aggaacttaccttctcgtacatcaaatgtgcacttatatttatatgggttaagtctcatgttgtacttttaagcttgttcaaagacttacttctgatgat |
31966330 |
T |
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| Q |
117 |
ggtataatctacctcttttttggattttatcatcatatcatccatatagactttagaggatgtcgacaattttttctttggaaaccttgtt-cattattt |
215 |
Q |
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| T |
31966331 |
ggtataatctacctcttgtttggattttatcatcatatcatccatatagactt-agaggatgtcgtcaattttttctttggaaaccttgtttcattattt |
31966429 |
T |
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| Q |
216 |
ggtaggtttcacatgtattcctatggttgaatgacattacgttgtaaaaatagttgcatgattcattcataagccatgctgattttgttgtacctagagt |
315 |
Q |
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| T |
31966430 |
ggtaggtttcacatgtattcctatggttgaatgacattacgttgtaaaaatagttgcatgattcattcataagccatggtgattttgttgtacctagagt |
31966529 |
T |
|
| Q |
316 |
aagaatccaaaaatgataataacttaaaactaaataaattatctactaacttatcaatgttaaggagggaggatccacatcattaagaaagatcatatta |
415 |
Q |
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| T |
31966530 |
aagaatccataaatgataataacttaaaactaaatgaattatctactaacttatcaatgtt----agagaggatccacatcattaagaaatatcatatta |
31966625 |
T |
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| Q |
416 |
acattagtat |
425 |
Q |
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| T |
31966626 |
acattagtat |
31966635 |
T |
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