View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14335_low_21 (Length: 407)
Name: NF14335_low_21
Description: NF14335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14335_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 14 - 390
Target Start/End: Complemental strand, 36188441 - 36188062
Alignment:
| Q |
14 |
ttctaaatatttcgtacataatatgctagtggtcaaaaccctctcgagttagcaaaatttcttgtcgtatatgtcgatagtttagacttagtcatcaatt |
113 |
Q |
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| T |
36188441 |
ttctaaatatttcgtacataatctgctagtggtcaaaaccctttcaagttagcaaaatttcttgtcgtatatgtcgatagtttagacttggtcatcaatt |
36188342 |
T |
|
| Q |
114 |
ttttgagcttgttcatcaattttctgccactattcttccaattttttcttttcaaccaccttctttcctgtctttgt--tataattaataaacaatatgt |
211 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
36188341 |
ttttgagcttgttcatcaattttctgctactattcttccaattttttcttttcaaccaccttctttcctgtctttgttatataattaataaacaatattt |
36188242 |
T |
|
| Q |
212 |
tgcatagtaacc-nnnnnnnnncaatatgttgcattgattgttcggcaccgaacccatttccatcctttttactattgttactttgcttgatgccttctt |
310 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36188241 |
tgcatagtaaccaaaaagaaaacaatatgttgcattgattgttcggcaccgaacccatttccatcctttttactattgttactttgcttgatgccttctt |
36188142 |
T |
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| Q |
311 |
gaaatatcaaatcgtcaagcttcacaattttgatttggagacataatacgtagttagaaaatgttgggttcaacgaggtg |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
36188141 |
gaaatatcaaatcgtcaagcttcacaattttgatttggagacataatacgtagttagaaaatgttagattcaacgaggtg |
36188062 |
T |
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