View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14335_low_23 (Length: 394)
Name: NF14335_low_23
Description: NF14335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14335_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 382
Target Start/End: Original strand, 31110064 - 31110427
Alignment:
| Q |
19 |
acataatagttacaaaatggaaaaatcaacatatcagcatggtacttaacaagcgtaaactcaacatatttgaatgagtctacagttgttaattgtctac |
118 |
Q |
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| T |
31110064 |
acataacagttacaaaatggaaaaatcaacatatcagcatggtacttaacaagcgtaaactcaacatatttgaatgagtctatagttgttaattgtctac |
31110163 |
T |
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| Q |
119 |
ttcctttaatattcacttcatgcttcatacatacatcaatctagtacatatatagcatcaaggctgtgcttatgatagaaggaatctaaggctttgaggc |
218 |
Q |
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| T |
31110164 |
ttcctttaatattcacttcatgcctcatacatacatcaatctagtacatatatagcatcaaggctgtgcatatgatagaaggaatctaaggctttgaggc |
31110263 |
T |
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| Q |
219 |
tgttacaacagaaacgcaaataacggaaggaaaaggaattattgaaagggtgaatcaccaagtttcatatatagcattcccattgaatgaggacttgagg |
318 |
Q |
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| T |
31110264 |
tgttacaacagaaacgcaaattacggaaggaaaaggaattattgaaagggtgaatcaccaagtttcatatatagcattcccattgaatgaggacttgatg |
31110363 |
T |
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| Q |
319 |
gggtgatccatcagagctagccttccaataaagtcaatagccttcctgctgcttgttggatttg |
382 |
Q |
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| T |
31110364 |
gggtgattcatcagagctagccttccaataaagtcaatagccttcctgctgcttgttggatttg |
31110427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 143 - 346
Target Start/End: Original strand, 31051685 - 31051889
Alignment:
| Q |
143 |
tcatacatacatcaatctagtacatatatagcatcaaggctgtgcttatgatagaaggaatctaaggctttgaggctgttacaacagaaacgcaaataac |
242 |
Q |
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| T |
31051685 |
tcatgcattcatcaatctggtgcatattcagcaccaaggctgtgcttaggatagaaggaacttaaggctttgaggccgattcaccagaaacgcaaataac |
31051784 |
T |
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| Q |
243 |
ggaaggaaaaggaattattgaaagggtgaatcaccaagtttcatatatagcattccca-ttgaatgaggacttgagggggtgatccatcagagctagcct |
341 |
Q |
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| T |
31051785 |
ggaaggaaaaggaattattgaaagggtgaatcaccaagtttcatatatagcattcccatttgaatgaggacttgagggggtgatccatcagagctagcct |
31051884 |
T |
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| Q |
342 |
tccaa |
346 |
Q |
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||||| |
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| T |
31051885 |
tccaa |
31051889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 31080261 - 31080359
Alignment:
| Q |
23 |
aatagttacaaaatgga---aaaatcaacatatcagcatggtac--ttaacaagcgtaaactcaacatatttgaatgagtctacagttgttaattgtct |
116 |
Q |
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| T |
31080261 |
aatagttacaaaatggataaaaaatcaacatatcatcatggtacaattaacaagcgtagactcaacatatttgaatgagtctatagttgttaattgtct |
31080359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 31044128 - 31044164
Alignment:
| Q |
258 |
tattgaaagggtgaatcaccaagtttcatatatagca |
294 |
Q |
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| T |
31044128 |
tattgaaaaggtgaatcaccaactttcatatatagca |
31044164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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