View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14335_low_25 (Length: 383)
Name: NF14335_low_25
Description: NF14335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14335_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 5e-69; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 201 - 367
Target Start/End: Complemental strand, 10712711 - 10712546
Alignment:
| Q |
201 |
caccctatacttacttctcatgccctctccaattcgaccattttatcccatttgaattttataaccggagtgcccgtcatttcgctagttgttataaata |
300 |
Q |
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| T |
10712711 |
caccctatacttacttctcatgccctctccaattcgaccattttatcccatttgaattttataatcggagtgcccgtcatttcgctagttgttataaata |
10712612 |
T |
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| Q |
301 |
ttctaattcacagtccacaaatcaaaacttaaccagtnnnnnnngagatgtacctgagcatgccata |
367 |
Q |
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| T |
10712611 |
ttctaattcacagtccacaaatcaaaatttaaccagt-aaaaaagagatgtacctgagcatgccata |
10712546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 31 - 166
Target Start/End: Complemental strand, 10712884 - 10712748
Alignment:
| Q |
31 |
agcagctgcgacaattgaattttggaatttgaaaccctaa-tccaagagacaaaatttatgtatttatagcaaatttagagaaccagttggtgggccatt |
129 |
Q |
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| T |
10712884 |
agcagctgcggcaattgaattttggaatttaaaaccctaaatccaagagacaaattttatgtatttatagcaaatttagagaagtagttggtgggccatt |
10712785 |
T |
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| Q |
130 |
tatttataaacaagtttcgtataataaatatggttcg |
166 |
Q |
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| T |
10712784 |
tatttataaacaaggttcgtataataaatatggttcg |
10712748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 10713258 - 10713350
Alignment:
| Q |
31 |
agcagctgcgacaattgaattttggaatttgaaaccct-aatccaagagacaaaatttatgtatttatagcaaatttagagaaccagttggtgg |
123 |
Q |
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| T |
10713258 |
agcagctgcggcaattgatttttggaatttgaaaccctaaatccaagagataaattttatatatttatagcaaa-ttagagaagcaattggtgg |
10713350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 9423076 - 9423149
Alignment:
| Q |
56 |
aatttgaaaccctaatccaagagacaaaatttatgtatttatagcaaatttagagaaccagttggtgggccatt |
129 |
Q |
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| T |
9423076 |
aatttgaaaccctaaatcaagagacagaatttttgtatttataggaaattgagagaaacaattggtgggccatt |
9423149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 9412735 - 9412793
Alignment:
| Q |
208 |
tacttacttctcatgccctctccaattcgaccattttatcccatttgaattttataacc |
266 |
Q |
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| T |
9412735 |
tacttacttcccataccccctccaatttgaccattttatcccgtttggattttataacc |
9412793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 9448644 - 9448720
Alignment:
| Q |
57 |
atttgaaaccctaatcc--aagagacaaaatttatgtatttatagcaaatttagagaaccagttggtgggccatttat |
132 |
Q |
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| T |
9448644 |
atttgaaaccctaattcctatgagacacaatttatgtatttatagcaaattta-agaaagaattggtgggccatttat |
9448720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 9448781 - 9448837
Alignment:
| Q |
208 |
tacttacttctcatgccctctccaattcgaccattttatcccatttgaattttataa |
264 |
Q |
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| T |
9448781 |
tacttacttctcatgtgccctccaatttgagcattttatctcatttggattttataa |
9448837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 29277957 - 29278015
Alignment:
| Q |
208 |
tacttacttctcatgccctctccaattcgaccattttatcccatttgaattttataacc |
266 |
Q |
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| T |
29277957 |
tacttacttctcatgcgccctccaatttgaccattttatctcatttggattttataacc |
29278015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 29277818 - 29277893
Alignment:
| Q |
57 |
atttgaaaccctaa-tccaagagacaaaatttatgtatttatagcaaatttagagaaccagttggtgggccatttat |
132 |
Q |
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| T |
29277818 |
atttgaaaccctaaatctatgaaacacaatttatgtatttatagcaaattta-agaaagaattggtgggccatttat |
29277893 |
T |
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