View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14335_low_27 (Length: 351)
Name: NF14335_low_27
Description: NF14335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14335_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 24 - 342
Target Start/End: Original strand, 30016335 - 30016653
Alignment:
| Q |
24 |
gcctctccctctgtaaagattttgtaaagaatcagtcaaacatacaaattaacaaatcaattgcatatagttgtaaaactagtcatcaccaagcaagatg |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30016335 |
gcctctccctctgtaaagattttgtaaagaatcagtcaaacatacaaattaacaaatcaattgcatatagttgtaaaactagtcatcaccaagcaagatg |
30016434 |
T |
|
| Q |
124 |
ccacacacatactgaattacttgaggctcgcccatttccatacatctaatagaacaatgattatcttgcataggctacatggagaatgtatattacacct |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
30016435 |
ccacacacatactgaattacttgaggctcgcccatttccatacatctaatagaacaatgcttatcttgcataggctacatggagaatgtatgttacacct |
30016534 |
T |
|
| Q |
224 |
attgctacaaattcaatcaacttgcannnnnnnnnnnnnnnnnngtggaaagggatctagacaaattctcctgaaaaactaccaactactggaaccagcc |
323 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30016535 |
attgctacaaattcaatcaacttgcatttttctttttattttttgtggaaagggatctagacaaattctcctgaaaaactaccaactactggaaccagcc |
30016634 |
T |
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| Q |
324 |
aggttaagggaagtattat |
342 |
Q |
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||||||||||| ||||||| |
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| T |
30016635 |
aggttaagggacgtattat |
30016653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 268 - 342
Target Start/End: Original strand, 1713477 - 1713551
Alignment:
| Q |
268 |
gtggaaagggatctagacaaattctcctgaaaaactaccaactactggaaccagccaggttaagggaagtattat |
342 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1713477 |
gtggaaagggatctagacaaattctcctgaaaaattaccaactactggaaccagccaggttaagggaagtattat |
1713551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 153 - 249
Target Start/End: Original strand, 1713344 - 1713440
Alignment:
| Q |
153 |
gcccatttccatacatctaatagaacaatgattatcttgcataggctacatggagaatgtatattacacctattgctacaaattcaatcaacttgca |
249 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||| ||| ||||| ||||||||||||||||||||| ||||| |
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| T |
1713344 |
gcccatttccatacatctaacagaacaatgcttatcttgcataggccacatggagaatatatgttacaaatattgctacaaattcaatcaatttgca |
1713440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 26 - 117
Target Start/End: Original strand, 1713251 - 1713345
Alignment:
| Q |
26 |
ctctccctctgtaaa---gattttgtaaagaatcagtcaaacatacaaattaacaaatcaattgcatatagttgtaaaactagtcatcaccaagc |
117 |
Q |
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||||||||||||||| |||| ||||||||||| |||||||| || ||| ||||||||| |||| ||||||||||||||||||||||| ||||| |
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| T |
1713251 |
ctctccctctgtaaattagattatgtaaagaatccgtcaaacagactaatgaacaaatcagttgcgtatagttgtaaaactagtcatcagcaagc |
1713345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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