View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14335_low_31 (Length: 333)
Name: NF14335_low_31
Description: NF14335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14335_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 315
Target Start/End: Complemental strand, 41089567 - 41089269
Alignment:
| Q |
17 |
tgttgtgtccaagtttgacttgaaagaccatgaatggaggtggtatatttgactgccagtttttgttgtcgaagcagaaaaaccaatcattaccgtgtgt |
116 |
Q |
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| T |
41089567 |
tgttgtgtccaagtttgatttgaaagaccatgcatggaggtggtgtagttgacgggcacctgttgttgtagcagcagaaaaaccaatccttaccgtgtgt |
41089468 |
T |
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| Q |
117 |
ggaagcactgctttcaaatcaatgacttgagcaatagttgataaggtaccatctgggtaagatacaacaacattcaatgtcttagagagattgtcatatg |
216 |
Q |
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| T |
41089467 |
ggaagcacttctttcaaatcaatgacttgagcaatagttgaaaaggtaccatctgggtaagatacaacaacattcaatgtcttagagagattgtcatagg |
41089368 |
T |
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| Q |
217 |
tgatagttacatcgaccaaggcgccactcactctattccatttcactgtctttaaagaaatcaaagagtttgcattaattccaacatgtgtgtatttgg |
315 |
Q |
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| T |
41089367 |
agatatttacatcgaccaaggcaccactaactctattccatttcactgtctttaaagaaatcaatgagttgacatcaattccaacatgagtgtatttgg |
41089269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 91 - 284
Target Start/End: Complemental strand, 41074393 - 41074200
Alignment:
| Q |
91 |
cagaaaaaccaatcattaccgtgtgtggaagcactgctttcaaatcaatgacttgagcaatagttgataaggtaccatctgggtaagatacaacaacatt |
190 |
Q |
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| T |
41074393 |
cagaaaaaccaatcctcactgtgtccggaagcactgctttcaaatcaatgacttgagcaatagttgaaaaggtaccatctgggtaagatacaatcacatt |
41074294 |
T |
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| Q |
191 |
caatgtcttagagagattgtcatatgtgatagttacatcgaccaaggcgccactcactctattccatttcactgtctttaaagaaatcaaagag |
284 |
Q |
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| T |
41074293 |
caatgtcttagagagactgtcataggagatatttacatcgaccaaggcgccactcactctattccatttcactgtccttaaagaaatcaaagag |
41074200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 41074485 - 41074448
Alignment:
| Q |
17 |
tgttgtgtccaagtttgacttgaaagaccatgaatgga |
54 |
Q |
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| T |
41074485 |
tgttgtggccaagtttgacttgaaagaccatgaatgga |
41074448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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