View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14335_low_33 (Length: 300)
Name: NF14335_low_33
Description: NF14335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14335_low_33 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 10991458 - 10991159
Alignment:
| Q |
1 |
atgattttatattatagttgaatttgattattttgattgcctttcagaatgtaagagtcgtaaatatgatagactgcagcggtgagcaagataaaaaaca |
100 |
Q |
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| T |
10991458 |
atgattttatattatagttgaatttgattattttgattgcctttcagaatgtaagagtcgtaaatatgatagactgcagcggtgagcaagataaaaaaca |
10991359 |
T |
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| Q |
101 |
ttgatcctaaaattgaccctgcatttatgaaaaacaatttnnnnnnnnnntgattttcttacatgctataattaaaataaagaaaatacagaatgtatag |
200 |
Q |
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| T |
10991358 |
ttgatcctaaaattgaccctgcatttatgaaaaacaatttaaaaaaaaaatgattttcttacatgctataattaaaataaagaaaatacagaatgtatag |
10991259 |
T |
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| Q |
201 |
ctgacctgtgttgactagcgtcgttgatgaacctataaaaatccaacttgcaaaactcagtttatcttagttaatgttctgaaataattttaaatgcaat |
300 |
Q |
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| T |
10991258 |
ctgacctgtgttgactagcgtcgttgatgaacctataaaaatcaaacttgcaaaactcagtttatatttgttaatgttctgaaataattttaaatgcaat |
10991159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 11025890 - 11025807
Alignment:
| Q |
49 |
atgtaagagtcgtaaatatgatagactgcagcggtgagcaagataaaaaacattgatcctaaaattgaccctgcatttatgaaa |
132 |
Q |
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| T |
11025890 |
atgtaagagtcataaatatggtagattccaccaatcaacaagataaaaaacaatgatcctaaaattgatcctgcatttatgaaa |
11025807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 10992440 - 10992350
Alignment:
| Q |
43 |
ttcagaatgtaagagtcgtaaatatgatagactgcagcggtgagcaagataaaaaacattgatcctaaaattgaccctgcatttatgaaaa |
133 |
Q |
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| T |
10992440 |
ttcagtatgtaagagtcataaacgtggtagactgcaccggttaacaagacaaaaaacagcgatcctagaattgatcctggatttatgaaaa |
10992350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 10930230 - 10930146
Alignment:
| Q |
49 |
atgtaagagtcgtaaatatgatagactgcagcggtgagcaagataaaaaacattgatcctaaaattgaccctgcatttatgaaaa |
133 |
Q |
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| T |
10930230 |
atgtaagagtcataaatatggtagattgcaccagtcaacaagacaaaaaataacgaacctaaaattgatcctgcatttatgaaaa |
10930146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 11040593 - 11040510
Alignment:
| Q |
49 |
atgtaagagtcgtaaatatgatagactgcagcggtgagcaagataaaaaacattgatcctaaaattgaccctgcatttatgaaa |
132 |
Q |
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| T |
11040593 |
atgtaagagtcataaatatggaagactccaccaatcaacaagatgaaaaacaacgatcctaaaattgatcctgcatttatgaaa |
11040510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 10992283 - 10992242
Alignment:
| Q |
199 |
agctgacctgtgttgactagcgtcgttgatgaacctataaaa |
240 |
Q |
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| T |
10992283 |
agctgacctgtgttgactagagccgttgatgaacctacaaaa |
10992242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 54352131 - 54352095
Alignment:
| Q |
2 |
tgattttatattatagttgaatttgattattttgatt |
38 |
Q |
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| T |
54352131 |
tgattttatattatagttgaatttgattatgttgatt |
54352095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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