View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14335_low_34 (Length: 282)
Name: NF14335_low_34
Description: NF14335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14335_low_34 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 52 - 282
Target Start/End: Complemental strand, 2783689 - 2783459
Alignment:
| Q |
52 |
ttcaatttcaaaccgaacaaaaattacggacaactatctcatttcattctcaccggaaccctaacaaatctccggcgaacatcaccgtcgtccatggcgt |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2783689 |
ttcaatttcaaaccgaacaaaaattacggacaactatctcatttcattctcaccggaaccctaacaaatctccggcgaacattgccgtcgtccatggcgt |
2783590 |
T |
|
| Q |
152 |
tcttctccaccgtctccacacaatccctccaccaacactgaacttcccttcctcctcttccgttcaccggaaatggcaaatgcgccaccgtccggtaacc |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2783589 |
tcttctccaccgtctccacacaatccctccaccaacactgaacttcccttcctcctattccgttcaccggaaatggcaaatgcgccaccgtccggtaacc |
2783490 |
T |
|
| Q |
252 |
ttactccggtctcgttaatctgttgaagcga |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
2783489 |
ttactccggtctcgttaatctgttgaagcga |
2783459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University