View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14335_low_35 (Length: 274)
Name: NF14335_low_35
Description: NF14335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14335_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 43070153 - 43070312
Alignment:
| Q |
100 |
atatgttaactcttgtgtacatcatttgttaaaataaattatatatattgggaggaagggacgatagtcaccatgtgattataaacatgtattgaataag |
199 |
Q |
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| T |
43070153 |
atatgttaactcttgtgtacatcatttgttaaaataaattatatatattgggaggaagggacgatagtcaccatgtgattataaacatgtattgaataag |
43070252 |
T |
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| Q |
200 |
aattgttcacattacatcaggattttagagagttcatatatatccttcctagcctaatca |
259 |
Q |
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| T |
43070253 |
aattgttcacattacatcaggattttagagagttcatatatatccttcctagcctaatca |
43070312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 43069614 - 43069647
Alignment:
| Q |
28 |
ataaaactcgttcgtaagctagtttatgccatca |
61 |
Q |
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| T |
43069614 |
ataaaactcgttcgtaagctagtttatgccatca |
43069647 |
T |
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