View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14335_low_4 (Length: 728)

Name: NF14335_low_4
Description: NF14335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14335_low_4
NF14335_low_4
[»] chr2 (24 HSPs)
chr2 (196-709)||(23853583-23854096)
chr2 (1-132)||(23853388-23853519)
chr2 (197-299)||(19577774-19577875)
chr2 (196-276)||(28603933-28604013)
chr2 (196-276)||(44630617-44630697)
chr2 (361-441)||(31327431-31327511)
chr2 (361-441)||(31334152-31334232)
chr2 (208-307)||(38592056-38592155)
chr2 (668-726)||(41256219-41256278)
chr2 (675-724)||(30477717-30477766)
chr2 (373-441)||(42926006-42926074)
chr2 (673-728)||(31000597-31000652)
chr2 (668-710)||(17495996-17496038)
chr2 (196-281)||(15446452-15446537)
chr2 (364-433)||(28603786-28603855)
chr2 (196-260)||(31328925-31328989)
chr2 (196-260)||(31335646-31335710)
chr2 (197-325)||(40846751-40846879)
chr2 (679-718)||(19593276-19593315)
chr2 (668-719)||(24048545-24048596)
chr2 (668-710)||(31275306-31275349)
chr2 (668-726)||(28455138-28455196)
chr2 (509-546)||(31327325-31327362)
chr2 (208-325)||(32080175-32080292)
[»] scaffold0171 (1 HSPs)
scaffold0171 (668-728)||(7350-7410)
[»] chr8 (14 HSPs)
chr8 (199-441)||(7002328-7002571)
chr8 (668-718)||(12957559-12957609)
chr8 (196-441)||(22714166-22714412)
chr8 (668-721)||(32240446-32240499)
chr8 (677-728)||(26853601-26853652)
chr8 (671-710)||(18790070-18790109)
chr8 (668-710)||(28075677-28075719)
chr8 (668-727)||(28900142-28900197)
chr8 (668-709)||(13803108-13803149)
chr8 (668-710)||(13528954-13528996)
chr8 (668-710)||(13618493-13618535)
chr8 (668-710)||(27117427-27117469)
chr8 (197-278)||(1910117-1910198)
chr8 (668-721)||(13305658-13305711)
[»] chr4 (28 HSPs)
chr4 (196-310)||(16948814-16948928)
chr4 (668-719)||(20717941-20717992)
chr4 (668-721)||(22219945-22219998)
chr4 (345-441)||(8029663-8029759)
chr4 (196-276)||(19102813-19102893)
chr4 (674-726)||(24580004-24580056)
chr4 (668-710)||(25367737-25367779)
chr4 (668-718)||(30797703-30797753)
chr4 (668-721)||(10450309-10450362)
chr4 (677-726)||(12805788-12805837)
chr4 (667-715)||(7023033-7023081)
chr4 (668-720)||(13553468-13553520)
chr4 (674-726)||(27303948-27304000)
chr4 (668-728)||(51885876-51885936)
chr4 (197-324)||(33468166-33468292)
chr4 (668-727)||(47023563-47023622)
chr4 (668-720)||(12840709-12840761)
chr4 (306-441)||(19102659-19102794)
chr4 (197-325)||(39216267-39216395)
chr4 (196-276)||(47244977-47245057)
chr4 (197-276)||(12875251-12875330)
chr4 (207-310)||(16955137-16955240)
chr4 (362-441)||(19107289-19107368)
chr4 (197-324)||(29349376-29349502)
chr4 (656-710)||(7144413-7144467)
chr4 (668-710)||(17331493-17331535)
chr4 (668-706)||(24912141-24912179)
chr4 (668-710)||(32022961-32023003)
[»] chr7 (34 HSPs)
chr7 (668-724)||(7143571-7143627)
chr7 (668-724)||(7152116-7152172)
chr7 (197-281)||(15973566-15973650)
chr7 (668-726)||(21544691-21544749)
chr7 (668-728)||(7494484-7494544)
chr7 (668-728)||(18494566-18494626)
chr7 (673-728)||(7776367-7776422)
chr7 (362-433)||(13313625-13313696)
chr7 (668-710)||(2352144-2352186)
chr7 (668-714)||(3094181-3094227)
chr7 (668-718)||(3401077-3401127)
chr7 (668-726)||(9121037-9121095)
chr7 (668-720)||(9687091-9687143)
chr7 (667-719)||(9974253-9974305)
chr7 (196-276)||(13313484-13313564)
chr7 (674-718)||(14074486-14074530)
chr7 (674-718)||(14384514-14384558)
chr7 (671-710)||(10925083-10925122)
chr7 (362-441)||(26286482-26286561)
chr7 (668-710)||(4091357-4091399)
chr7 (670-716)||(18497202-18497248)
chr7 (680-721)||(20469603-20469644)
chr7 (668-704)||(7325835-7325871)
chr7 (196-276)||(10674447-10674527)
chr7 (673-708)||(9404615-9404650)
chr7 (197-324)||(10387520-10387647)
chr7 (197-324)||(10392259-10392386)
chr7 (668-727)||(24469100-24469158)
chr7 (668-727)||(24474048-24474106)
chr7 (463-501)||(11289485-11289523)
chr7 (668-710)||(12357718-12357760)
chr7 (671-708)||(11466915-11466952)
chr7 (673-710)||(21473036-21473073)
chr7 (372-441)||(30258781-30258850)
[»] chr3 (14 HSPs)
chr3 (196-276)||(29351074-29351154)
chr3 (668-718)||(25918097-25918147)
chr3 (373-501)||(13155950-13156079)
chr3 (668-721)||(33913408-33913461)
chr3 (373-500)||(12566031-12566159)
chr3 (373-500)||(13260434-13260562)
chr3 (364-436)||(29350924-29350996)
chr3 (215-325)||(20508427-20508537)
chr3 (340-441)||(2207115-2207216)
chr3 (196-276)||(3656429-3656508)
chr3 (668-702)||(14419353-14419387)
chr3 (677-726)||(2728467-2728516)
chr3 (672-709)||(5631512-5631549)
chr3 (669-710)||(8839676-8839717)
[»] chr5 (20 HSPs)
chr5 (378-546)||(23688669-23688835)
chr5 (673-721)||(19571048-19571096)
chr5 (670-717)||(16617460-16617507)
chr5 (321-434)||(4872586-4872699)
chr5 (668-721)||(11273695-11273748)
chr5 (232-305)||(17162675-17162748)
chr5 (668-721)||(20715835-20715888)
chr5 (196-276)||(9725935-9726015)
chr5 (232-284)||(17159215-17159267)
chr5 (362-501)||(25688987-25689127)
chr5 (668-726)||(18451072-18451130)
chr5 (198-280)||(22832689-22832771)
chr5 (670-719)||(16621482-16621531)
chr5 (668-721)||(25682147-25682200)
chr5 (196-268)||(4872742-4872814)
chr5 (680-728)||(17768641-17768689)
chr5 (668-709)||(17029276-17029317)
chr5 (673-710)||(24518961-24518998)
chr5 (668-705)||(26327884-26327921)
chr5 (673-718)||(26502028-26502073)
[»] chr1 (16 HSPs)
chr1 (668-726)||(34522115-34522173)
chr1 (668-721)||(27682929-27682982)
chr1 (669-721)||(30676667-30676719)
chr1 (196-251)||(12260848-12260903)
chr1 (306-434)||(16036305-16036434)
chr1 (668-721)||(17836800-17836853)
chr1 (340-441)||(23192142-23192243)
chr1 (668-728)||(50048239-50048299)
chr1 (668-710)||(23420486-23420528)
chr1 (197-264)||(5283443-5283510)
chr1 (197-276)||(16036453-16036532)
chr1 (345-436)||(40166647-40166738)
chr1 (668-726)||(23224619-23224677)
chr1 (668-710)||(25664823-25664865)
chr1 (363-441)||(39587697-39587775)
chr1 (673-718)||(11768899-11768944)
[»] chr6 (20 HSPs)
chr6 (196-276)||(19674620-19674700)
chr6 (668-710)||(13782416-13782458)
chr6 (668-710)||(13789738-13789780)
chr6 (668-710)||(13803993-13804035)
chr6 (668-718)||(22727241-22727291)
chr6 (669-718)||(9395432-9395481)
chr6 (668-709)||(13194289-13194330)
chr6 (673-726)||(15387157-15387209)
chr6 (668-721)||(15576189-15576242)
chr6 (674-726)||(15320079-15320130)
chr6 (667-710)||(8037055-8037098)
chr6 (197-324)||(11428766-11428893)
chr6 (668-710)||(6177911-6177953)
chr6 (196-276)||(12689819-12689899)
chr6 (674-726)||(15370720-15370771)
chr6 (668-724)||(17858948-17859004)
chr6 (362-441)||(12689664-12689743)
chr6 (667-726)||(15350248-15350306)
chr6 (668-707)||(17320794-17320833)
chr6 (668-726)||(6091931-6091989)
[»] scaffold0386 (2 HSPs)
scaffold0386 (671-718)||(7545-7592)
scaffold0386 (668-708)||(10564-10604)
[»] scaffold0002 (1 HSPs)
scaffold0002 (373-501)||(150909-151038)
[»] scaffold0362 (1 HSPs)
scaffold0362 (668-719)||(9961-10012)
[»] scaffold0054 (2 HSPs)
scaffold0054 (362-441)||(26134-26213)
scaffold0054 (196-276)||(26288-26368)
[»] scaffold0103 (1 HSPs)
scaffold0103 (668-726)||(36503-36561)
[»] scaffold0855 (1 HSPs)
scaffold0855 (668-721)||(2026-2079)
[»] scaffold0847 (1 HSPs)
scaffold0847 (668-721)||(2191-2244)
[»] scaffold0006 (1 HSPs)
scaffold0006 (668-702)||(78573-78607)
[»] scaffold0108 (1 HSPs)
scaffold0108 (673-710)||(9910-9947)


Alignment Details
Target: chr2 (Bit Score: 444; Significance: 0; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 196 - 709
Target Start/End: Original strand, 23853583 - 23854096
Alignment:
Q  196 gatatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcattcatattcagttaatttggt 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23853583 gatatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcattcatattcagttaatttggt 23853682  T
Q  296 tcttccacttttgtgagtttatttctttttagcttgtccgatccgttttttactttagatgatccatgggttgcatgatttttaagtttacttaatttct 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23853683 tcttccacttttgtgagtttatttctttttagcttgtccgatccgttttttactttagatgatccatgggttgcatgatttttaagtttacttaatttct 23853782  T
Q  396 aagtttctctgtattagttataaactcttcctataaaaggatagctagctagttcattcggtacactgaaaagtattctaaaactttgaatgtttttctt 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23853783 aagtttctctgtattagttataaactcttcctataaaaggatagctagctagttcattcggtacactgaaaagtattctaaaactttgaatgtttttctt 23853882  T
Q  496 ctctctnnnnnnnttttgacttgtgttaacaagtctttcttctcttaatcttcnnnnnnngccacatcaaatttaagagtgttcttaagactatagtcnn 595  Q
    ||||||       ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||      
T  23853883 ctctcttccccccttttgacttgtgttaacaagtctttcttctcttaatcttctttttttgccacatcaaatttaagagtgttcttaagactatagtctt 23853982  T
Q  596 nnnnnncggtataatgttcctttgaaattaagaatgctcatatgagcatgatatatgtacgaaagggcaactattgacaagtgcaccaaatcgtaacaag 695  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23853983 ttttttcggtataatgttcctttgaaattaagaatgctcatatgagcatgatatatgtacgaaagggcaactattgacaagtgcaccaaatcataacaag 23854082  T
Q  696 taataaagtagtaa 709  Q
    ||||||||||||||    
T  23854083 taataaagtagtaa 23854096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 23853388 - 23853519
Alignment:
Q  1 aactctagttaattggtatctatgttgatgtcctcttcttcttaccttattttattggtatctatgtaattgaactttagttattaaattgaaaaacaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23853388 aactctagttaattggtatctatgttgatgtcctcttcttcttaccttattttattggtatctatgtaattgaactttagttattaaattgaaaaacaat 23853487  T
Q  101 tgagtgtggggtcccacatgaaatggaacata 132  Q
    ||||||||||||||||||||||||||||||||    
T  23853488 tgagtgtggggtcccacatgaaatggaacata 23853519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 197 - 299
Target Start/End: Original strand, 19577774 - 19577875
Alignment:
Q  197 atatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcattcatattcagttaatttggtt 296  Q
    |||||||||| ||||||||||||| | |||| || |||||||||||| ||||||| ||||||| |||||||| |||||||||||| || ||| |||| ||    
T  19577774 atatcacttcgcataattttagttcacgttgattttgataagattgagaatccaa-tgagttttctatatttccttcattcatatccaattagtttgttt 19577872  T
Q  297 ctt 299  Q
    |||    
T  19577873 ctt 19577875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 196 - 276
Target Start/End: Complemental strand, 28604013 - 28603933
Alignment:
Q  196 gatatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcatt 276  Q
    ||||||||||| ||||||||||| |||||||  ||||||||||||||| ||||||| ||| |||||||| ||| |||||||    
T  28604013 gatatcacttcccataattttaggttatgttcgttatgataagattgagaatccaactgaatttcctatctttccttcatt 28603933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 196 - 276
Target Start/End: Original strand, 44630617 - 44630697
Alignment:
Q  196 gatatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcatt 276  Q
    ||||||||||||||||||||||| |||||||  || |||||||||||||||||||| ||| ||| |||| ||| |||||||    
T  44630617 gatatcacttctcataattttaggttatgtttgttgtgataagattgaaaatccaactgaattttctatctttccttcatt 44630697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 361 - 441
Target Start/End: Complemental strand, 31327511 - 31327431
Alignment:
Q  361 atgggttgcatgatttttaagtttacttaatttctaagtttctctgtattagttataaactcttcctataaaaggatagct 441  Q
    ||||||||| | ||||||||||||||||||||  ||||||||||   |||||||| ||||||| |||||||||||| ||||    
T  31327511 atgggttgcttaatttttaagtttacttaattcttaagtttctccaaattagttacaaactctccctataaaaggagagct 31327431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 361 - 441
Target Start/End: Complemental strand, 31334232 - 31334152
Alignment:
Q  361 atgggttgcatgatttttaagtttacttaatttctaagtttctctgtattagttataaactcttcctataaaaggatagct 441  Q
    ||||||||| | ||||||||||||||||||||  ||||||||||   |||||||| ||||||| |||||||||||| ||||    
T  31334232 atgggttgcttaatttttaagtttacttaattcttaagtttctccaaattagttacaaactctccctataaaaggagagct 31334152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 208 - 307
Target Start/End: Complemental strand, 38592155 - 38592056
Alignment:
Q  208 cataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcattcatattcagttaatttggttcttccactttt 307  Q
    ||||||||||  |||||||| || ||||||||||||  ||| |||||||| |||||||||| || |||||||||||| ||| |||| ||| |||| ||||    
T  38592155 cataattttaacttatgttgattgtgataagattgagtatctaattgagtatcctatatttcctccattcatattcatttagtttgtttcctccattttt 38592056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 668 - 726
Target Start/End: Original strand, 41256219 - 41256278
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagt-agtaagcttatcgttcttcaca 726  Q
    ||||||||||||||||||||||||||| ||||||||| |||||| |||||||||| ||||    
T  41256219 attgacaagtgcaccaaatcgtaacaaataataaagtaagtaagtttatcgttctccaca 41256278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 675 - 724
Target Start/End: Original strand, 30477717 - 30477766
Alignment:
Q  675 agtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttca 724  Q
    ||||||||||||||||| || ||||||||||||||| |||||||||||||    
T  30477717 agtgcaccaaatcgtaataaataataaagtagtaagtttatcgttcttca 30477766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 373 - 441
Target Start/End: Original strand, 42926006 - 42926074
Alignment:
Q  373 atttttaagtttacttaatttctaagtttctctgtattagttataaactcttcctataaaaggatagct 441  Q
    ||||||||||||||||||||  ||| |||||||  |||||||| ||||||| |||||||||||| ||||    
T  42926006 atttttaagtttacttaattcttaaatttctctaaattagttacaaactctccctataaaaggagagct 42926074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 673 - 728
Target Start/End: Complemental strand, 31000652 - 31000597
Alignment:
Q  673 caagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttcacagg 728  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||| |||| ||||||    
T  31000652 caagtgcatcaaattgtaacaagtaataaagtagtaagtttatcattctccacagg 31000597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 668 - 710
Target Start/End: Original strand, 17495996 - 17496038
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaag 710  Q
    ||||||||||||||||||||| ||||||||||| |||||||||    
T  17495996 attgacaagtgcaccaaatcggaacaagtaatatagtagtaag 17496038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 281
Target Start/End: Original strand, 15446452 - 15446537
Alignment:
Q  196 gatatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcattcatat 281  Q
    ||||||||||| ||||||||||| |||||| | |  |||||||||||| |||| || |||||||| |||  || ||||||||||||    
T  15446452 gatatcacttcacataattttagcttatgtaggtcgtgataagattgagaatcgaactgagtttcttatcgttccttcattcatat 15446537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 364 - 433
Target Start/End: Complemental strand, 28603855 - 28603786
Alignment:
Q  364 ggttgcatgatttttaagtttacttaatttctaagtttctctgtattagttataaactcttcctataaaa 433  Q
    |||||| | ||||||||||||||||||||  ||||||||||   |||||||| ||||||| |||||||||    
T  28603855 ggttgcttaatttttaagtttacttaattcttaagtttctccaaattagttacaaactctccctataaaa 28603786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 31328989 - 31328925
Alignment:
Q  196 gatatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttc 260  Q
    |||||||||||||| |||||||| |||||||  || |||||||||||| ||||||| ||| ||||    
T  31328989 gatatcacttctcacaattttaggttatgtttgttgtgataagattgagaatccaactgaatttc 31328925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 31335710 - 31335646
Alignment:
Q  196 gatatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttc 260  Q
    |||||||||||||| |||||||| |||||||  || |||||||||||| ||||||| ||| ||||    
T  31335710 gatatcacttctcacaattttaggttatgtttgttgtgataagattgagaatccaactgaatttc 31335646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 197 - 325
Target Start/End: Original strand, 40846751 - 40846879
Alignment:
Q  197 atatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcattcatattcagttaatttggtt 296  Q
    ||||||||||  |||| ||||||||||| || || |||||||| | | ||| ||||||| |||| ||| ||| ||||||||| ||| | | | |||| ||    
T  40846751 atatcacttcctataaatttagtttatgatggttgtgataagaataagaattcaattgaatttcttatctttccttcattcaaatttaatgagtttgttt 40846850  T
Q  297 cttccacttttgtgagtttatttcttttt 325  Q
    | ||||||||||||  ||| |||||||||    
T  40846851 cctccacttttgtggatttgtttcttttt 40846879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 679 - 718
Target Start/End: Complemental strand, 19593315 - 19593276
Alignment:
Q  679 caccaaatcgtaacaagtaataaagtagtaagcttatcgt 718  Q
    |||||||||||||||||||||||||| ||||| |||||||    
T  19593315 caccaaatcgtaacaagtaataaagttgtaagtttatcgt 19593276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 719
Target Start/End: Complemental strand, 24048596 - 24048545
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgtt 719  Q
    |||||||| |||||||||||||||||| ||||| ||||||||  ||||||||    
T  24048596 attgacaaatgcaccaaatcgtaacaaataatacagtagtaaatttatcgtt 24048545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 710
Target Start/End: Complemental strand, 31275349 - 31275306
Alignment:
Q  668 attgacaagtgcaccaaatcgtaa-caagtaataaagtagtaag 710  Q
    |||| ||||||||||||||||||| |||||||||||||||||||    
T  31275349 attggcaagtgcaccaaatcgtaaacaagtaataaagtagtaag 31275306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 668 - 726
Target Start/End: Original strand, 28455138 - 28455196
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttcaca 726  Q
    |||| ||||| ||||||||| ||||||||| |||||||||||| |||| ||||| ||||    
T  28455138 attggcaagtacaccaaatcataacaagtattaaagtagtaagtttatggttctccaca 28455196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 546
Target Start/End: Complemental strand, 31327362 - 31327325
Alignment:
Q  509 ttttgacttgtgttaacaagtctttcttctcttaatct 546  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  31327362 ttttgacttgtgttgacaagtctttcttctcttcatct 31327325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 325
Target Start/End: Complemental strand, 32080292 - 32080175
Alignment:
Q  208 cataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcattcatattcagttaatttggttcttccactttt 307  Q
    ||||||||| | ||| |||| || |||||||||||| |||||| |||| |||| ||| | |  ||||||||||| || ||  |||| ||||||| |||||    
T  32080292 cataatttttgcttacgttggttgtgataagattgagaatccatttgattttcttatctctcattcattcatatccaatttgtttgtttcttcccctttt 32080193  T
Q  308 gtgagtttatttcttttt 325  Q
    ||| |||| ||| |||||    
T  32080192 gtgggtttgtttattttt 32080175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 668 - 728
Target Start/End: Complemental strand, 7410 - 7350
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttcacagg 728  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  7410 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagtttatcgttctccacagg 7350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 199 - 441
Target Start/End: Complemental strand, 7002571 - 7002328
Alignment:
Q  199 atcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcattcatattcagttaatttggttct 298  Q
    |||||||  |||||||||||||| ||||| || || |||||||   ||||||| | ||||| |||| ||||||||||||||||  | ||||| |  |  |    
T  7002571 atcactttccataattttagtttgtgttggttgtgttaagattttgaatccaactcagttttctatcttttcttcattcatatcaaattaatctattcat 7002472  T
Q  299 tccacttttgtgagtttatttctttttag-cttgtccgatccgttttttactttagatgatccatgggttgcatgatttttaagtttacttaatttctaa 397  Q
    |||||||||||| |||| ||||||||||  ||| || ||| ||||| |||||| || ||||   |||||||| | ||||||||||||||||||||  |||    
T  7002471 tccacttttgtgggtttctttctttttaaacttatctgattcgtttgttacttgagctgatttgtgggttgcgtaatttttaagtttacttaattattaa 7002372  T
Q  398 gtttctctgtattagttataaactcttcctataaaaggatagct 441  Q
    |||||||   |||| ||| ||||| |  ||||||||||| ||||    
T  7002371 gtttctccaaattatttacaaactatctctataaaaggagagct 7002328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 668 - 718
Target Start/End: Complemental strand, 12957609 - 12957559
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgt 718  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12957609 attgacaagtgcactaaatcgtaacaagtaataaagtagtaagcttatcgt 12957559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 196 - 441
Target Start/End: Original strand, 22714166 - 22714412
Alignment:
Q  196 gatatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcattcatattcagttaatttggt 295  Q
    ||||||||||| ||||| ||||| ||||||||  | |||||||| | | ||| |||||||||||| | |  ||  |||||||||||||| | | |||| |    
T  22714166 gatatcacttcccataaatttagcttatgttggctgtgataagaataagaattcaattgagtttcttgtcattctttcattcatattcaatgagtttgtt 22714265  T
Q  296 tcttccacttttgtgagtttatttcttttt-agcttgtccgatccgttttttactttagatgatccatgggttgcatgatttttaagtttacttaatttc 394  Q
    || || | |||| || |||| ||||||||| ||||| | ||||  |||| |||||| || |||||  |||||||| | |||| |||||||||||||||      
T  22714266 tcatctaattttttgggtttgtttcttttttagcttatgcgattagtttgttacttgagctgatctgtgggttgcttaatttctaagtttacttaattct 22714365  T
Q  395 taagtttctctgtattagttataaactcttcctataaaaggatagct 441  Q
    ||||||||||   |||| ||| ||||||  |||||||||||| ||||    
T  22714366 taagtttctccaaattatttacaaactccccctataaaaggagagct 22714412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 668 - 721
Target Start/End: Complemental strand, 32240499 - 32240446
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttct 721  Q
    |||| |||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  32240499 attggcaagtgcaccaaattgtaacaagtaataaagtagtaagtttatcgttct 32240446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 677 - 728
Target Start/End: Complemental strand, 26853652 - 26853601
Alignment:
Q  677 tgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttcacagg 728  Q
    |||||||||||||||||||||||||||||||||| | |||||||| ||||||    
T  26853652 tgcaccaaatcgtaacaagtaataaagtagtaagttcatcgttctccacagg 26853601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 671 - 710
Target Start/End: Complemental strand, 18790109 - 18790070
Alignment:
Q  671 gacaagtgcaccaaatcgtaacaagtaataaagtagtaag 710  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  18790109 gacaagtgcaccaaatcgtatcaagtaataaagtagtaag 18790070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 668 - 710
Target Start/End: Complemental strand, 28075719 - 28075677
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaag 710  Q
    |||||||||| |||||||| |||||||||||||||||||||||    
T  28075719 attgacaagtacaccaaattgtaacaagtaataaagtagtaag 28075677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 668 - 727
Target Start/End: Original strand, 28900142 - 28900197
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttcacag 727  Q
    |||||||||| |||||||| ||||||||||||||||||||    ||||||||||||||||    
T  28900142 attgacaagtacaccaaattgtaacaagtaataaagtagt----ttatcgttcttcacag 28900197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 668 - 709
Target Start/End: Original strand, 13803108 - 13803149
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 709  Q
    ||||||||||||| ||||||||||||||||||||| ||||||    
T  13803108 attgacaagtgcatcaaatcgtaacaagtaataaaatagtaa 13803149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 668 - 710
Target Start/End: Original strand, 13528954 - 13528996
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaag 710  Q
    ||||| |||||||||||||| ||| ||||||||||||||||||    
T  13528954 attgataagtgcaccaaatcataataagtaataaagtagtaag 13528996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 668 - 710
Target Start/End: Original strand, 13618493 - 13618535
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaag 710  Q
    ||||| |||||||||||||| ||| ||||||||||||||||||    
T  13618493 attgataagtgcaccaaatcataataagtaataaagtagtaag 13618535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 668 - 710
Target Start/End: Original strand, 27117427 - 27117469
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaag 710  Q
    |||| ||| |||||||||||||| |||||||||||||||||||    
T  27117427 attggcaaatgcaccaaatcgtatcaagtaataaagtagtaag 27117469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 1910117 - 1910198
Alignment:
Q  197 atatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcattca 278  Q
    |||||||||||||||| |||| |||||| || || |||||||| | | |||  |||||| |||| ||||||| |||||||||    
T  1910117 atatcacttctcataaatttaatttatggtggttgtgataagaataagaatttaattgaatttcttatatttccttcattca 1910198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 668 - 721
Target Start/End: Complemental strand, 13305711 - 13305658
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttct 721  Q
    |||| ||||||| | |||| |||||||||||||||||||| || ||||||||||    
T  13305711 attggcaagtgcgcaaaattgtaacaagtaataaagtagttagtttatcgttct 13305658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 8e-20; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 196 - 310
Target Start/End: Complemental strand, 16948928 - 16948814
Alignment:
Q  196 gatatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcattcatattcagttaatttggt 295  Q
    ||||||| ||| ||||||||||| |||||||| ||||||||||||||| |||| || |||||||||||||| | |||||| ||||| || ||| |||| |    
T  16948928 gatatcatttcccataattttagcttatgttggttatgataagattgagaatcgaactgagtttcctatatctccttcatccatatccaattagtttgtt 16948829  T
Q  296 tcttccacttttgtg 310  Q
    || | ||||||||||    
T  16948828 tcattcacttttgtg 16948814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 668 - 719
Target Start/End: Complemental strand, 20717992 - 20717941
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgtt 719  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  20717992 attggcaagtgcaccaaatcgtaacaagtaataaagtagtaagtttatcgtt 20717941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 668 - 721
Target Start/End: Complemental strand, 22219998 - 22219945
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttct 721  Q
    |||||||||||||| ||||| |||||||||||||||||||||| ||||||||||    
T  22219998 attgacaagtgcactaaatcataacaagtaataaagtagtaagtttatcgttct 22219945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 345 - 441
Target Start/End: Original strand, 8029663 - 8029759
Alignment:
Q  345 ttactttagatgatccatgggttgcatgatttttaagtttacttaatttctaagtttctctgtattagttataaactcttcctataaaaggatagct 441  Q
    |||||| || |||||  |||||||| | ||||||||||||||||||||  ||||||||||   |||||||| ||||||| |||||||||||| ||||    
T  8029663 ttacttgagctgatctgtgggttgcttaatttttaagtttacttaattcttaagtttctccaaattagttacaaactctccctataaaaggagagct 8029759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 196 - 276
Target Start/End: Complemental strand, 19102893 - 19102813
Alignment:
Q  196 gatatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcatt 276  Q
    ||||||||||||||||||||||| |||||||  || |||||||||||| ||||||| ||| ||| |||| ||| |||||||    
T  19102893 gatatcacttctcataattttaggttatgtttgttgtgataagattgagaatccaactgaattttctatctttccttcatt 19102813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 674 - 726
Target Start/End: Complemental strand, 24580056 - 24580004
Alignment:
Q  674 aagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttcaca 726  Q
    |||||||||||||||||||||||||||||||||| || |||||||||| ||||    
T  24580056 aagtgcaccaaatcgtaacaagtaataaagtagttagtttatcgttctccaca 24580004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 668 - 710
Target Start/End: Complemental strand, 25367779 - 25367737
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaag 710  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  25367779 attgacaagtgcaccaaatcgaaacaagtaataaagtagtaag 25367737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 668 - 718
Target Start/End: Complemental strand, 30797753 - 30797703
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgt 718  Q
    |||| |||||||| ||||||||||||||||||||||||||||| |||||||    
T  30797753 attggcaagtgcatcaaatcgtaacaagtaataaagtagtaagtttatcgt 30797703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 668 - 721
Target Start/End: Original strand, 10450309 - 10450362
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttct 721  Q
    |||| |||||||||||||||||||||| ||||||||||||||| ||| ||||||    
T  10450309 attggcaagtgcaccaaatcgtaacaaataataaagtagtaagtttagcgttct 10450362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 677 - 726
Target Start/End: Original strand, 12805788 - 12805837
Alignment:
Q  677 tgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttcaca 726  Q
    |||||||||||||||||||||||||||||||||| ||||| |||| ||||    
T  12805788 tgcaccaaatcgtaacaagtaataaagtagtaagtttatcattctccaca 12805837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 667 - 715
Target Start/End: Original strand, 7023033 - 7023081
Alignment:
Q  667 tattgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttat 715  Q
    |||||| ||||||||||||||||||||| ||||||||||||||| ||||    
T  7023033 tattgataagtgcaccaaatcgtaacaaataataaagtagtaagtttat 7023081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 668 - 720
Target Start/End: Original strand, 13553468 - 13553520
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttc 720  Q
    ||||||||||| | |||||||||| |||||||||||||||||| |||||||||    
T  13553468 attgacaagtgtatcaaatcgtaataagtaataaagtagtaagtttatcgttc 13553520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 674 - 726
Target Start/End: Complemental strand, 27304000 - 27303948
Alignment:
Q  674 aagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttcaca 726  Q
    ||||| |||||||||||| |||||||||||||||||| |||||||| ||||||    
T  27304000 aagtgtaccaaatcgtaataagtaataaagtagtaagtttatcgtttttcaca 27303948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 668 - 728
Target Start/End: Complemental strand, 51885936 - 51885876
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttcacagg 728  Q
    |||| |||||||||| ||||||| ||||||||||||||||||| |||| ||||| ||||||    
T  51885936 attggcaagtgcaccgaatcgtatcaagtaataaagtagtaagtttattgttctccacagg 51885876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 197 - 324
Target Start/End: Original strand, 33468166 - 33468292
Alignment:
Q  197 atatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcattcatattcagttaatttggtt 296  Q
    |||||||||| ||||| ||||| ||||| || ||||||||||| | | |||  |||||| |||| ||||||| ||||||||| |||||  || |||| ||    
T  33468166 atatcacttcccataaatttagcttatggtggttatgataagaataagaatttaattgaatttcttatatttccttcattcaaattca-atagtttgttt 33468264  T
Q  297 cttccacttttgtgagtttatttctttt 324  Q
    | ||||||||||||  ||| ||||||||    
T  33468265 cctccacttttgtggatttgtttctttt 33468292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 668 - 727
Target Start/End: Original strand, 47023563 - 47023622
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttcacag 727  Q
    |||| ||||| || |||||||||||||||||||| |||||||| ||||| ||||||||||    
T  47023563 attggcaagtacatcaaatcgtaacaagtaataaggtagtaagtttatctttcttcacag 47023622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 668 - 720
Target Start/End: Original strand, 12840709 - 12840761
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttc 720  Q
    |||| |||||||||  |||||||||||||| |||||||||||| |||||||||    
T  12840709 attggcaagtgcactgaatcgtaacaagtattaaagtagtaagtttatcgttc 12840761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 306 - 441
Target Start/End: Complemental strand, 19102794 - 19102659
Alignment:
Q  306 ttgtgagtttatttcttttt-agcttgtccgatccgttttttactttagatgatccatgggttgcatgatttttaagtttacttaatttctaagtttctc 404  Q
    ||||| |||| ||||||||| | ||| ||| || ||||| |||||| || ||||   |||||||| | ||||||||||||||| ||||  ||||||||||    
T  19102794 ttgtgggtttgtttctttttgaacttatcctattcgtttgttacttgagctgatatgtgggttgcttaatttttaagtttact-aattcttaagtttctc 19102696  T
Q  405 tgtattagttataaactcttcctataaaaggatagct 441  Q
       |||||||| ||||||| |||||||||||| ||||    
T  19102695 caaattagttacaaactctccctataaaaggagagct 19102659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 197 - 325
Target Start/End: Original strand, 39216267 - 39216395
Alignment:
Q  197 atatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcattcatattcagttaatttggtt 296  Q
    |||||||||| ||||| ||||  |||||||| || |||||||| | | ||| ||||||||||| |||| ||| |||  |||||||||| | | |||| ||    
T  39216267 atatcacttcgcataaatttatcttatgttggttgtgataagaataagaattcaattgagttttctatctttccttggttcatattcaatgagtttgttt 39216366  T
Q  297 cttccacttttgtgagtttatttcttttt 325  Q
    | | ||||||||||  ||| |||||||||    
T  39216367 cctacacttttgtggatttgtttcttttt 39216395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 276
Target Start/End: Complemental strand, 47245057 - 47244977
Alignment:
Q  196 gatatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcatt 276  Q
    ||||||| ||| ||||||||||| |||||||  || ||||| |||||| ||||||| ||| ||||||||| || |||||||    
T  47245057 gatatcatttcccataattttaggttatgtttgttgtgatatgattgagaatccaactgaatttcctatacttccttcatt 47244977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 276
Target Start/End: Complemental strand, 12875330 - 12875251
Alignment:
Q  197 atatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcatt 276  Q
    |||||||||| ||||||||||| |||||||| || |||||| ||||| ||| ||  ||| |||||||| ||| |||||||    
T  12875330 atatcacttcccataattttaggttatgttggttgtgataacattgagaatgcagctgaatttcctatctttccttcatt 12875251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 310
Target Start/End: Complemental strand, 16955240 - 16955137
Alignment:
Q  207 tcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcattcatattcagttaatttggttcttccacttt 306  Q
    |||||||||||  || ||||| || |||||||||||| ||||||| ||||||||  || ||| |||||||||| |  | ||| |||| ||| ||||||||    
T  16955240 tcataattttatattttgttggttgtgataagattgataatccaactgagtttctaatctttccttcattcatgtcaaattagtttgtttcatccacttt 16955141  T
Q  307 tgtg 310  Q
    ||||    
T  16955140 tgtg 16955137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 362 - 441
Target Start/End: Complemental strand, 19107368 - 19107289
Alignment:
Q  362 tgggttgcatgatttttaagtttacttaatttctaagtttctctgtattagttataaactcttcctataaaaggatagct 441  Q
    |||||||| | ||||||||||||||||||||  ||| ||||||   |||||||| ||| ||| |||||||||||| ||||    
T  19107368 tgggttgcttaatttttaagtttacttaattcttaaatttctccaaattagttacaaattctccctataaaaggagagct 19107289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 324
Target Start/End: Original strand, 29349376 - 29349502
Alignment:
Q  197 atatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcattcatattcagttaatttggtt 296  Q
    |||||| ||| ||||| ||||| ||||| |  ||||||||||| | |||||  |||| | |||| ||||||| ||||||||| || ||  ||||||| ||    
T  29349376 atatcatttcccataaatttagcttatggttgttatgataagaataaaaatttaattaaatttcttatatttccttcattcaaatcca-ataatttgttt 29349474  T
Q  297 cttccacttttgtgagtttatttctttt 324  Q
    | ||||||||||||| ||| ||||||||    
T  29349475 cctccacttttgtgaatttgtttctttt 29349502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 656 - 710
Target Start/End: Complemental strand, 7144467 - 7144413
Alignment:
Q  656 gaaagggcaactattgacaagtgcaccaaatcgtaacaagtaataaagtagtaag 710  Q
    ||||||| || ||||| |||||| |||||||||||| || |||||||||||||||    
T  7144467 gaaagggtaattattggcaagtgtaccaaatcgtaataaataataaagtagtaag 7144413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 668 - 710
Target Start/End: Original strand, 17331493 - 17331535
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaag 710  Q
    ||||| |||||||||||||||||  ||||||||||||||||||    
T  17331493 attgaaaagtgcaccaaatcgtagtaagtaataaagtagtaag 17331535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 668 - 706
Target Start/End: Original strand, 24912141 - 24912179
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtag 706  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  24912141 attgacaagtgcaccaaattgaaacaagtaataaagtag 24912179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 668 - 710
Target Start/End: Complemental strand, 32023003 - 32022961
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaag 710  Q
    ||||||||||| || ||||||||||||||||||||||| ||||    
T  32023003 attgacaagtgtactaaatcgtaacaagtaataaagtaataag 32022961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 668 - 724
Target Start/End: Complemental strand, 7143627 - 7143571
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttca 724  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  7143627 attgacaagtgcaccaaatcgtaacaagtaataaagtagcaagtttatcgttcttca 7143571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 668 - 724
Target Start/End: Complemental strand, 7152172 - 7152116
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttca 724  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  7152172 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagtttatcgtttttca 7152116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 197 - 281
Target Start/End: Complemental strand, 15973650 - 15973566
Alignment:
Q  197 atatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcattcatat 281  Q
    |||| ||||| |||||||||||||||||||| || |||||||| ||||||| |||||||  ||||||| ||||||||||| ||||    
T  15973650 atataacttcccataattttagtttatgttggttgtgataagactgaaaatacaattgaacttcctatcttttcttcatttatat 15973566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 668 - 726
Target Start/End: Original strand, 21544691 - 21544749
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttcaca 726  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||| |||||| ||||    
T  21544691 attggcaagtgcaccaaatcgtaacaagtaataaagtagtaagtttaccgttctccaca 21544749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 668 - 728
Target Start/End: Complemental strand, 7494544 - 7494484
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttcacagg 728  Q
    |||| |||||||||||||||||||||||||||||| ||||||| ||||| |||| ||||||    
T  7494544 attggcaagtgcaccaaatcgtaacaagtaataaattagtaagtttatcattctccacagg 7494484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 668 - 728
Target Start/End: Original strand, 18494566 - 18494626
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttcacagg 728  Q
    |||| ||||||||||||||||||||||||||||| |||||||| |||| ||||| ||||||    
T  18494566 attggcaagtgcaccaaatcgtaacaagtaataaggtagtaagtttattgttctccacagg 18494626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 673 - 728
Target Start/End: Original strand, 7776367 - 7776422
Alignment:
Q  673 caagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttcacagg 728  Q
    ||||||||||||||| |||||||||| ||||||||||| |||||||||| ||||||    
T  7776367 caagtgcaccaaatcttaacaagtaacaaagtagtaagtttatcgttctccacagg 7776422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 362 - 433
Target Start/End: Original strand, 13313625 - 13313696
Alignment:
Q  362 tgggttgcatgatttttaagtttacttaatttctaagtttctctgtattagttataaactcttcctataaaa 433  Q
    |||||||| | ||||||||||||||||||||  ||||||||||   |||||||| |||||||||||||||||    
T  13313625 tgggttgcttaatttttaagtttacttaattcttaagtttctccaaattagttacaaactcttcctataaaa 13313696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 668 - 710
Target Start/End: Original strand, 2352144 - 2352186
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaag 710  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  2352144 attgacaagtgcatcaaatcgtaacaagtaataaagtagtaag 2352186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 668 - 714
Target Start/End: Complemental strand, 3094227 - 3094181
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagctta 714  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||    
T  3094227 attgacaagagcaccaaatcgtaacaagtaataaagtaggaagctta 3094181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 668 - 718
Target Start/End: Complemental strand, 3401127 - 3401077
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgt 718  Q
    |||||||||||||| |||||||||||||||||||||||||||  |||||||    
T  3401127 attgacaagtgcacaaaatcgtaacaagtaataaagtagtaattttatcgt 3401077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 668 - 726
Target Start/End: Original strand, 9121037 - 9121095
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttcaca 726  Q
    |||| ||||||| ||||||||||||||||||||| |||||||| |||||||||| ||||    
T  9121037 attgtcaagtgcgccaaatcgtaacaagtaataaggtagtaagtttatcgttctccaca 9121095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 668 - 720
Target Start/End: Original strand, 9687091 - 9687143
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttc 720  Q
    ||||||||||| | |||||||||| |||||||||||||||||| |||||||||    
T  9687091 attgacaagtgtatcaaatcgtaataagtaataaagtagtaagtttatcgttc 9687143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 667 - 719
Target Start/End: Complemental strand, 9974305 - 9974253
Alignment:
Q  667 tattgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgtt 719  Q
    |||| ||||||||||||||| |||||| |||||||||||||||| ||||||||    
T  9974305 tattaacaagtgcaccaaatggtaacatgtaataaagtagtaagtttatcgtt 9974253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 276
Target Start/End: Original strand, 13313484 - 13313564
Alignment:
Q  196 gatatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcatt 276  Q
    ||||||||||| |||||||||||||||||||| || ||||||||| || |||||||  || |||| ||| ||| |||||||    
T  13313484 gatatcacttcacataattttagtttatgttggttgtgataagatcgagaatccaacagaatttcatatctttccttcatt 13313564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 674 - 718
Target Start/End: Complemental strand, 14074530 - 14074486
Alignment:
Q  674 aagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgt 718  Q
    |||||||| |||||||||||||||||||||||||||| |||||||    
T  14074530 aagtgcacaaaatcgtaacaagtaataaagtagtaagtttatcgt 14074486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 674 - 718
Target Start/End: Complemental strand, 14384558 - 14384514
Alignment:
Q  674 aagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgt 718  Q
    |||||||| |||||||||||||||||||||||||||| |||||||    
T  14384558 aagtgcacaaaatcgtaacaagtaataaagtagtaagtttatcgt 14384514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 671 - 710
Target Start/End: Complemental strand, 10925122 - 10925083
Alignment:
Q  671 gacaagtgcaccaaatcgtaacaagtaataaagtagtaag 710  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  10925122 gacaagtgcaccaaatcgtatcaagtaataaagtagtaag 10925083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 362 - 441
Target Start/End: Original strand, 26286482 - 26286561
Alignment:
Q  362 tgggttgcatgatttttaagtttacttaatttctaagtttctctgtattagttataaactcttcctataaaaggatagct 441  Q
    |||||||||| ||||||||||||||||||||  ||||||||||   |||||||| ||||||| | | |||||||| ||||    
T  26286482 tgggttgcataatttttaagtttacttaattcttaagtttctccaaattagttacaaactctccttgtaaaaggagagct 26286561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 668 - 710
Target Start/End: Original strand, 4091357 - 4091399
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaag 710  Q
    |||| |||||| |||||||||||||||||||||||||||||||    
T  4091357 attggcaagtgtaccaaatcgtaacaagtaataaagtagtaag 4091399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 670 - 716
Target Start/End: Complemental strand, 18497248 - 18497202
Alignment:
Q  670 tgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatc 716  Q
    ||||||||||||||||||||||||||||| || |||||||| |||||    
T  18497248 tgacaagtgcaccaaatcgtaacaagtaacaatgtagtaagtttatc 18497202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 680 - 721
Target Start/End: Original strand, 20469603 - 20469644
Alignment:
Q  680 accaaatcgtaacaagtaataaagtagtaagcttatcgttct 721  Q
    ||||||| ||||||||||||||||||||||| ||||||||||    
T  20469603 accaaattgtaacaagtaataaagtagtaagtttatcgttct 20469644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 668 - 704
Target Start/End: Original strand, 7325835 - 7325871
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagt 704  Q
    ||||||||||||| |||||||||||||||||||||||    
T  7325835 attgacaagtgcatcaaatcgtaacaagtaataaagt 7325871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 276
Target Start/End: Complemental strand, 10674527 - 10674447
Alignment:
Q  196 gatatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcatt 276  Q
    ||||||||||| |||||||| ||||||||||| ||  ||||||||||| |||| | |||| |||||| | ||| |||||||    
T  10674527 gatatcacttcccataatttgagtttatgttggttgcgataagattgagaatctagttgaatttcctctctttccttcatt 10674447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 673 - 708
Target Start/End: Original strand, 9404615 - 9404650
Alignment:
Q  673 caagtgcaccaaatcgtaacaagtaataaagtagta 708  Q
    ||||||||||||||||| ||||||||||||||||||    
T  9404615 caagtgcaccaaatcgtgacaagtaataaagtagta 9404650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 324
Target Start/End: Original strand, 10387520 - 10387647
Alignment:
Q  197 atatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcattcatattcagttaatttggtt 296  Q
    |||||||||| ||||| ||||| ||||| |  || |||||||| | | ||| ||||||| |||| ||| ||||||||||||| || ||   | |||| ||    
T  10387520 atatcacttcccataaatttagcttatggttgttgtgataagaataagaattcaattgaatttcttatcttttcttcattcaaatccaacgagtttgttt 10387619  T
Q  297 cttccacttttgtgagtttatttctttt 324  Q
    | ||||||||||||| ||| ||||||||    
T  10387620 cctccacttttgtgaatttgtttctttt 10387647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 324
Target Start/End: Original strand, 10392259 - 10392386
Alignment:
Q  197 atatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcattcatattcagttaatttggtt 296  Q
    |||||||||| ||||| ||||| ||||| || || |||||||| | | ||| ||||||| |||| ||| ||| ||||||||| || || | | |||| ||    
T  10392259 atatcacttcccataaatttaggttatggtgattgtgataagaataagaattcaattgaatttcttatctttccttcattcaaatccaatgagtttgttt 10392358  T
Q  297 cttccacttttgtgagtttatttctttt 324  Q
    | ||||||||||||  ||| ||||||||    
T  10392359 cctccacttttgtggatttgtttctttt 10392386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 727
Target Start/End: Original strand, 24469100 - 24469158
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttcacag 727  Q
    ||||||||||||| |||||  ||||||||||||| |||||||| |||||||||| |||||    
T  24469100 attgacaagtgcatcaaata-taacaagtaataaggtagtaagtttatcgttctccacag 24469158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 727
Target Start/End: Original strand, 24474048 - 24474106
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttcacag 727  Q
    ||||||||||||| |||||  ||||||||||||| |||||||| |||||||||| |||||    
T  24474048 attgacaagtgcatcaaata-taacaagtaataaggtagtaagtttatcgttctccacag 24474106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 463 - 501
Target Start/End: Original strand, 11289485 - 11289523
Alignment:
Q  463 gaaaagtattctaaaactttgaatgtttttcttctctct 501  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  11289485 gaaaagtattctgaaactttgaatctttttcttctctct 11289523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 668 - 710
Target Start/End: Original strand, 12357718 - 12357760
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaag 710  Q
    |||| ||||||||||| ||||||||||||| ||||||||||||    
T  12357718 attgtcaagtgcaccagatcgtaacaagtattaaagtagtaag 12357760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 671 - 708
Target Start/End: Original strand, 11466915 - 11466952
Alignment:
Q  671 gacaagtgcaccaaatcgtaacaagtaataaagtagta 708  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  11466915 gacaagtgcatcaaatcgtaagaagtaataaagtagta 11466952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 673 - 710
Target Start/End: Complemental strand, 21473073 - 21473036
Alignment:
Q  673 caagtgcaccaaatcgtaacaagtaataaagtagtaag 710  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  21473073 caagtgcaccaaatcataacaagttataaagtagtaag 21473036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 441
Target Start/End: Complemental strand, 30258850 - 30258781
Alignment:
Q  372 gatttttaagtttacttaatttctaagtttctctgtattagttataaactcttcctataaaaggatagct 441  Q
    |||||||||||||||||||||  |||||||||  | |||||||| ||| ||| |||||| ||||| ||||    
T  30258850 gatttttaagtttacttaattcttaagtttcttcgaattagttacaaattctccctatataaggagagct 30258781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 196 - 276
Target Start/End: Complemental strand, 29351154 - 29351074
Alignment:
Q  196 gatatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcatt 276  Q
    ||||||||||||||||||||||| |||||||  || |||||||||||||||| ||| ||| |||||||| ||| |||||||    
T  29351154 gatatcacttctcataattttagattatgtttgttgtgataagattgaaaattcaactgaatttcctatctttccttcatt 29351074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 668 - 718
Target Start/End: Original strand, 25918097 - 25918147
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgt 718  Q
    ||||||||||||||||||| |||||||||||||| |||||||| |||||||    
T  25918097 attgacaagtgcaccaaattgtaacaagtaataacgtagtaagtttatcgt 25918147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 373 - 501
Target Start/End: Original strand, 13155950 - 13156079
Alignment:
Q  373 atttttaagtttacttaatttctaagtttctctgtattagttataaactcttcctataaaaggatagct-agctagttcattcggtacactgaaaagtat 471  Q
    |||||||||||||||||| |  ||||||||||   |||| | || |||||| |||||||||||| |||| | |||||||||||| | ||| || ||||||    
T  13155950 atttttaagtttacttaactcttaagtttctccagattaatcatgaactctccctataaaaggagagctcacctagttcattcgatgcaccgagaagtat 13156049  T
Q  472 tctaaaactttgaatgtttttcttctctct 501  Q
    ||| ||||||  |||  |||||||||||||    
T  13156050 tctgaaacttcaaatacttttcttctctct 13156079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 668 - 721
Target Start/End: Original strand, 33913408 - 33913461
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttct 721  Q
    |||| |||||||||||||| ||||||||||||||||||||||  ||||||||||    
T  33913408 attggcaagtgcaccaaattgtaacaagtaataaagtagtaaatttatcgttct 33913461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 373 - 500
Target Start/End: Original strand, 12566031 - 12566159
Alignment:
Q  373 atttttaagtttacttaatttctaagtttctctgtattagttataaactcttcctataaaaggatagctagc-tagttcattcggtacactgaaaagtat 471  Q
    ||||||||||||||||||||   |||||||||   |||| | || |||||| |||||||||| | |||| || ||||||||||| | ||| || ||||||    
T  12566031 atttttaagtttacttaattctgaagtttctccagattaatcatgaactctccctataaaagcagagctcgcctagttcattcgatgcaccgagaagtat 12566130  T
Q  472 tctaaaactttgaatgtttttcttctctc 500  Q
    ||| ||||||  ||| |||||||||||||    
T  12566131 tctgaaacttcaaatatttttcttctctc 12566159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 373 - 500
Target Start/End: Original strand, 13260434 - 13260562
Alignment:
Q  373 atttttaagtttacttaatttctaagtttctctgtattagttataaactcttcctataaaaggatagctagc-tagttcattcggtacactgaaaagtat 471  Q
    ||||||||||||||||||||   |||||||||   |||| | || |||||| |||||||||| | |||| || ||||||||||| | ||| || ||||||    
T  13260434 atttttaagtttacttaattctgaagtttctccagattaatcatgaactctccctataaaagcagagctcgcctagttcattcgatgcaccgagaagtat 13260533  T
Q  472 tctaaaactttgaatgtttttcttctctc 500  Q
    ||| ||||||  ||| |||||||||||||    
T  13260534 tctgaaacttcaaatatttttcttctctc 13260562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 364 - 436
Target Start/End: Complemental strand, 29350996 - 29350924
Alignment:
Q  364 ggttgcatgatttttaagtttacttaatttctaagtttctctgtattagttataaactcttcctataaaagga 436  Q
    |||||| | ||||||||||||||||||||  ||||||||||   |||||||| ||||||| ||||||||||||    
T  29350996 ggttgcttaatttttaagtttacttaattcttaagtttctccaaattagttacaaactctccctataaaagga 29350924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 325
Target Start/End: Complemental strand, 20508537 - 20508427
Alignment:
Q  215 ttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcattcatattcagttaatttggttcttccacttttgtgagtt 314  Q
    ||||||||||||| || |||||||| |   ||||||| ||| ||  |||| |||||||| |||||||||| ||| |||| ||| |||||||||||| |||    
T  20508537 ttagtttatgttggttgtgataagaatattaatccaactgaattctctatcttttcttcgttcatattcaattagtttgtttcctccacttttgtgggtt 20508438  T
Q  315 tatttcttttt 325  Q
    | |||| ||||    
T  20508437 tgtttcatttt 20508427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 340 - 441
Target Start/End: Original strand, 2207115 - 2207216
Alignment:
Q  340 gttttttactttagatgatccatgggttgcatgatttttaagtttacttaatttctaagtttctctgtattagttataaactcttcctataaaaggatag 439  Q
    |||| |||||| || ||||| ||||||||| | ||||||||||||||||||||  |||||||||    || ||||| ||||||| ||| |||||||| ||    
T  2207115 gtttgttacttgagctgatctatgggttgcttaatttttaagtttacttaattattaagtttcttcaaatcagttacaaactctccctgtaaaaggagag 2207214  T
Q  440 ct 441  Q
    ||    
T  2207215 ct 2207216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 276
Target Start/End: Original strand, 3656429 - 3656508
Alignment:
Q  196 gatatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcatt 276  Q
    ||||||||||||||||||||||  |||||||  || |||||||||||| ||| ||| ||| |||||||| |||| ||||||    
T  3656429 gatatcacttctcataattttatgttatgtttgttgtgataagattgataat-caactgaatttcctatctttttttcatt 3656508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 668 - 702
Target Start/End: Complemental strand, 14419387 - 14419353
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaa 702  Q
    |||| ||||||||||||||||||||||||||||||    
T  14419387 attggcaagtgcaccaaatcgtaacaagtaataaa 14419353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 677 - 726
Target Start/End: Original strand, 2728467 - 2728516
Alignment:
Q  677 tgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttcaca 726  Q
    ||||||||||||||||||  || ||||||||||| |||||||||| ||||    
T  2728467 tgcaccaaatcgtaacaataaacaaagtagtaagtttatcgttctccaca 2728516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 672 - 709
Target Start/End: Original strand, 5631512 - 5631549
Alignment:
Q  672 acaagtgcaccaaatcgtaacaagtaataaagtagtaa 709  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  5631512 acaagtgcaccaaatcgtaccaagtaataaattagtaa 5631549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 710
Target Start/End: Complemental strand, 8839717 - 8839676
Alignment:
Q  669 ttgacaagtgcaccaaatcgtaacaagtaataaagtagtaag 710  Q
    |||||||||||| |||| ||||| ||||||||||||||||||    
T  8839717 ttgacaagtgcatcaaaacgtaataagtaataaagtagtaag 8839676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 378 - 546
Target Start/End: Complemental strand, 23688835 - 23688669
Alignment:
Q  378 taagtttacttaatttctaagtttctctgtattagttataaactcttcctataaaaggatagctag-ctagttcattcggtacactgaaaagtattctaa 476  Q
    |||||||||||||||  |||||||||||  ||| |||| ||||| || ||||||||||| |||| | |||||| ||||| |||||  ||||||||| | |    
T  23688835 taagtttacttaattcttaagtttctctagatttgttacaaacttttactataaaaggagagctcgcctagttaattcgctacacataaaagtattttga 23688736  T
Q  477 aactttgaatgtttttcttctctctnnnnnnnttttgacttgtgttaacaagtctttcttctcttaatct 546  Q
    ||||| ||||   ||||||||||||       |||||||||||||| |||||| ||||||||||| ||||    
T  23688735 aacttcgaatacctttcttctctct---ccccttttgacttgtgttgacaagtgtttcttctcttcatct 23688669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 673 - 721
Target Start/End: Complemental strand, 19571096 - 19571048
Alignment:
Q  673 caagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttct 721  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  19571096 caagtgcaccaaatcgtaacaaataataaagtagtaagtttatcgttct 19571048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 670 - 717
Target Start/End: Original strand, 16617460 - 16617507
Alignment:
Q  670 tgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcg 717  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  16617460 tgacaagtgcaccaaatcgtaactagtaataaagtagtaagtttatcg 16617507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 321 - 434
Target Start/End: Complemental strand, 4872699 - 4872586
Alignment:
Q  321 tttttagcttgtccgatccgttttttactttagatgatccatgggttgcatgatttttaagtttacttaatttctaagtttctctgtattagttataaac 420  Q
    |||||| ||| ||||||| |||| |||||| || || | | |||||||| | ||||||||||||| ||||||  ||||||||||   |||||||| ||||    
T  4872699 tttttaacttatccgatcagtttgttacttgagctggtacgtgggttgcttaatttttaagtttatttaattcttaagtttctccaaattagttacaaac 4872600  T
Q  421 tcttcctataaaag 434  Q
    ||| ||||||||||    
T  4872599 tctccctataaaag 4872586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 668 - 721
Target Start/End: Original strand, 11273695 - 11273748
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttct 721  Q
    |||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||    
T  11273695 attggcaagtgcatcaaattgtaacaagtaataaagtagtaagtttatcgttct 11273748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 232 - 305
Target Start/End: Complemental strand, 17162748 - 17162675
Alignment:
Q  232 tgataagattgaaaatccaattgagtttcctatattttcttcattcatattcagttaatttggttcttccactt 305  Q
    |||||||||||| | ||||| |||||||||||| ||||||||||||||||||| ||  |||| ||| |||||||    
T  17162748 tgataagattgagagtccaactgagtttcctatcttttcttcattcatattcaattcgtttgtttcctccactt 17162675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 668 - 721
Target Start/End: Complemental strand, 20715888 - 20715835
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttct 721  Q
    ||||||||||||||||||| |||| ||||||||| |||||||| ||||||||||    
T  20715888 attgacaagtgcaccaaattgtaataagtaataaggtagtaagtttatcgttct 20715835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 276
Target Start/End: Original strand, 9725935 - 9726015
Alignment:
Q  196 gatatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcatt 276  Q
    |||||||||| |||||||||||| |||||||  || |||||||||||| ||||||| ||| ||| |||| ||| |||||||    
T  9725935 gatatcacttttcataattttaggttatgtttattgtgataagattgagaatccaactgaattttctatctttccttcatt 9726015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 17159267 - 17159215
Alignment:
Q  232 tgataagattgaaaatccaattgagtttcctatattttcttcattcatattca 284  Q
    |||||||||||||| ||||| | |||||||||| |||||||||||||||||||    
T  17159267 tgataagattgaaactccaactaagtttcctatcttttcttcattcatattca 17159215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 362 - 501
Target Start/End: Original strand, 25688987 - 25689127
Alignment:
Q  362 tgggttgcatgatttttaagtttacttaatttctaagtttctctgtattagttataaactcttcctataaaaggatagctag-ctagttcattcggtaca 460  Q
    |||||||| | | ||||||||||||||||||  |||||||||  | ||| |||| ||||| | |||||||||||| |||| | |||||||||| |   ||    
T  25688987 tgggttgcttaacttttaagtttacttaattattaagtttctacggatttgttacaaactttacctataaaaggagagctcgcctagttcatttgactca 25689086  T
Q  461 ctgaaaagtattctaaaactttgaatgtttttcttctctct 501  Q
    | |||||||||||| ||||||  |||  |||||||||||||    
T  25689087 ccgaaaagtattctgaaacttcaaatccttttcttctctct 25689127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 668 - 726
Target Start/End: Original strand, 18451072 - 18451130
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttcaca 726  Q
    |||| |||||| |||| |||||||||||||||||||| ||||| |||||||||| ||||    
T  18451072 attggcaagtggaccagatcgtaacaagtaataaagttgtaagtttatcgttctccaca 18451130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 280
Target Start/End: Original strand, 22832689 - 22832771
Alignment:
Q  198 tatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcattcata 280  Q
    ||||||||  |||| |||||||||||||||||| |||||||| ||  ||||||||||| | || ||| ||| |||||||||||    
T  22832689 tatcactttccatagttttagtttatgttgtttgtgataagaatgtgaatccaattgaatatcttatctttccttcattcata 22832771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 670 - 719
Target Start/End: Original strand, 16621482 - 16621531
Alignment:
Q  670 tgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgtt 719  Q
    ||||||||||||||||||||||| ||||||||| |||||||  |||||||    
T  16621482 tgacaagtgcaccaaatcgtaactagtaataaaatagtaagtctatcgtt 16621531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 668 - 721
Target Start/End: Complemental strand, 25682200 - 25682147
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttct 721  Q
    |||| ||||||||| |||||||||||||||||||| ||||||  ||||||||||    
T  25682200 attggcaagtgcactaaatcgtaacaagtaataaaatagtaattttatcgttct 25682147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 268
Target Start/End: Complemental strand, 4872814 - 4872742
Alignment:
Q  196 gatatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattt 268  Q
    ||||||||| | ||||| ||||| |||||||  || |||||||||||| ||||||| ||| ||||||||||||    
T  4872814 gatatcactccccataactttaggttatgtttgttgtgataagattgagaatccaactgaatttcctatattt 4872742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 680 - 728
Target Start/End: Complemental strand, 17768689 - 17768641
Alignment:
Q  680 accaaatcgtaacaagtaataaagtagtaagcttatcgttcttcacagg 728  Q
    |||||||||||| |||||||||||||||||| |||| ||||| ||||||    
T  17768689 accaaatcgtaagaagtaataaagtagtaagtttattgttctccacagg 17768641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 668 - 709
Target Start/End: Complemental strand, 17029317 - 17029276
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 709  Q
    |||| ||||||||||||||||||||||| |||||| ||||||    
T  17029317 attggcaagtgcaccaaatcgtaacaagaaataaaatagtaa 17029276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 673 - 710
Target Start/End: Complemental strand, 24518998 - 24518961
Alignment:
Q  673 caagtgcaccaaatcgtaacaagtaataaagtagtaag 710  Q
    |||||| | |||||||||||||||||||||||||||||    
T  24518998 caagtgtatcaaatcgtaacaagtaataaagtagtaag 24518961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 668 - 705
Target Start/End: Original strand, 26327884 - 26327921
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagta 705  Q
    |||||||||||||||| || ||||||||||||||||||    
T  26327884 attgacaagtgcaccacatggtaacaagtaataaagta 26327921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 673 - 718
Target Start/End: Original strand, 26502028 - 26502073
Alignment:
Q  673 caagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgt 718  Q
    |||||||||||||  ||||||||||||||||||||| | |||||||    
T  26502028 caagtgcaccaaactgtaacaagtaataaagtagtatgtttatcgt 26502073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 668 - 726
Target Start/End: Complemental strand, 34522173 - 34522115
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttcaca 726  Q
    |||| |||||||||||||||||||||||||||||| ||||||| |||||||||| ||||    
T  34522173 attggcaagtgcaccaaatcgtaacaagtaataaaatagtaagtttatcgttctccaca 34522115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 668 - 721
Target Start/End: Complemental strand, 27682982 - 27682929
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttct 721  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||| |||||    
T  27682982 attgacaagtgcaccaaaccgtaacaagtaataaagtagtaagtttattgttct 27682929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 669 - 721
Target Start/End: Complemental strand, 30676719 - 30676667
Alignment:
Q  669 ttgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttct 721  Q
    ||||||||| |||||||||||||||||||||||||||||||  ||||||||||    
T  30676719 ttgacaagttcaccaaatcgtaacaagtaataaagtagtaaatttatcgttct 30676667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 12260903 - 12260848
Alignment:
Q  196 gatatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaa 251  Q
    ||||||||||||||||||||||| |||||||| || |||||||||||| |||||||    
T  12260903 gatatcacttctcataattttagcttatgttggttgtgataagattgagaatccaa 12260848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 306 - 434
Target Start/End: Complemental strand, 16036434 - 16036305
Alignment:
Q  306 ttgtgagtttatttcttttt-agcttgtccgatccgttttttactttagatgatccatgggttgcatgatttttaagtttacttaatttctaagtttctc 404  Q
    ||||| |||| ||||||||| | ||| ||||||  |||| || ||| || |||||  |||||||| | ||||||||||||||||||||  ||||||||||    
T  16036434 ttgtgggtttgtttctttttgaacttatccgattagtttgtttcttgagctgatctgtgggttgcttaatttttaagtttacttaattcttaagtttctc 16036335  T
Q  405 tgtattagttataaactcttcctataaaag 434  Q
       |||||||| ||||||| ||||||||||    
T  16036334 caaattagttacaaactctccctataaaag 16036305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 668 - 721
Target Start/End: Original strand, 17836800 - 17836853
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttct 721  Q
    |||| ||||||||||||||| |||||||||| ||||||||||| ||||||||||    
T  17836800 attggcaagtgcaccaaatcataacaagtaagaaagtagtaagtttatcgttct 17836853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 340 - 441
Target Start/End: Original strand, 23192142 - 23192243
Alignment:
Q  340 gttttttactttagatgatccatgggttgcatgatttttaagtttacttaatttctaagtttctctgtattagttataaactcttcctataaaaggatag 439  Q
    |||| |||||| || |||||  |||||||| | ||||||||||||||||||||  | ||||||||   |||||||| ||||||| |||||||||||| ||    
T  23192142 gtttgttacttgagctgatctgtgggttgcttaatttttaagtttacttaattctttagtttctccaaattagttacaaactctccctataaaaggagag 23192241  T
Q  440 ct 441  Q
    ||    
T  23192242 ct 23192243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 668 - 728
Target Start/End: Complemental strand, 50048299 - 50048239
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttcacagg 728  Q
    |||| |||||||| |||||  |||||||||||||||||||||| |||||||||| ||||||    
T  50048299 attggcaagtgcatcaaattataacaagtaataaagtagtaagtttatcgttctccacagg 50048239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 668 - 710
Target Start/End: Original strand, 23420486 - 23420528
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaag 710  Q
    |||| |||||| |||||||||||||||||||||||||||||||    
T  23420486 attggcaagtgtaccaaatcgtaacaagtaataaagtagtaag 23420528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 5283443 - 5283510
Alignment:
Q  197 atatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctat 264  Q
    |||||||||  | ||||||||| |||| ||  || ||||||||||||||||| |||||||||||||||    
T  5283443 atatcactttccttaattttagcttatattcgttgtgataagattgaaaatctaattgagtttcctat 5283510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 276
Target Start/End: Complemental strand, 16036532 - 16036453
Alignment:
Q  197 atatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcatt 276  Q
    |||||||||  ||||||||||| |||||||  || |||||||||||| ||||||| ||| |||| ||| ||| |||||||    
T  16036532 atatcactttccataattttaggttatgtttgttgtgataagattgagaatccaactgaatttcttatctttccttcatt 16036453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 345 - 436
Target Start/End: Complemental strand, 40166738 - 40166647
Alignment:
Q  345 ttactttagatgatccatgggttgcatgatttttaagtttacttaatttctaagtttctctgtattagttataaactcttcctataaaagga 436  Q
    |||||| || |||||  |||||||| | ||||||||||||||||||||  ||||||||||   |||||||||||| | | |||| |||||||    
T  40166738 ttacttgagctgatctgtgggttgcttaatttttaagtttacttaattcttaagtttctccaaattagttataaattatccctaaaaaagga 40166647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 668 - 726
Target Start/End: Complemental strand, 23224677 - 23224619
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttcaca 726  Q
    |||| |||||||  |||||||||||||||||||| |||||||| ||||| |||| ||||    
T  23224677 attggcaagtgcgtcaaatcgtaacaagtaataaggtagtaagtttatcattctccaca 23224619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 668 - 710
Target Start/End: Original strand, 25664823 - 25664865
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaag 710  Q
    |||| ||||||||||||||| || |||||||||||||||||||    
T  25664823 attggcaagtgcaccaaatcatatcaagtaataaagtagtaag 25664865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 363 - 441
Target Start/End: Original strand, 39587697 - 39587775
Alignment:
Q  363 gggttgcatgatttttaagtttacttaatttctaagtttctctgtattagttataaactcttcctataaaaggatagct 441  Q
    ||||||| | ||||||||||||||||||||  || |||||||   |||||||| ||||||| ||| |||||||| ||||    
T  39587697 gggttgcttaatttttaagtttacttaattcttatgtttctccaaattagttacaaactctccctgtaaaaggagagct 39587775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 673 - 718
Target Start/End: Original strand, 11768899 - 11768944
Alignment:
Q  673 caagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgt 718  Q
    |||||||| |||||||||| ||| |||||||||||||| |||||||    
T  11768899 caagtgcatcaaatcgtaataaggaataaagtagtaagtttatcgt 11768944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 196 - 276
Target Start/End: Complemental strand, 19674700 - 19674620
Alignment:
Q  196 gatatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcatt 276  Q
    ||||||||||| ||||||||||| |||||||  || |||||||||||| ||||||| ||| |||||||| ||| |||||||    
T  19674700 gatatcacttcccataattttaggttatgtttgttttgataagattgagaatccaactgaatttcctatctttccttcatt 19674620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 668 - 710
Target Start/End: Complemental strand, 13782458 - 13782416
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaag 710  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  13782458 attgacaagtgcaccaaatcgtaacaattaataaagtagtaag 13782416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 668 - 710
Target Start/End: Complemental strand, 13789780 - 13789738
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaag 710  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  13789780 attgacaagtgcaccaaatcgtaacaattaataaagtagtaag 13789738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 668 - 710
Target Start/End: Complemental strand, 13804035 - 13803993
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaag 710  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  13804035 attgacaagtgcaccaaatcgtaacaattaataaagtagtaag 13803993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 668 - 718
Target Start/End: Complemental strand, 22727291 - 22727241
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgt 718  Q
    ||||||||||||||||||| ||||||||||||||||||||||  |||||||    
T  22727291 attgacaagtgcaccaaattgtaacaagtaataaagtagtaaatttatcgt 22727241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 669 - 718
Target Start/End: Original strand, 9395432 - 9395481
Alignment:
Q  669 ttgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgt 718  Q
    |||||||||||| |||||||||||||||||| |||||||||| |||||||    
T  9395432 ttgacaagtgcaacaaatcgtaacaagtaatgaagtagtaagtttatcgt 9395481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 668 - 709
Target Start/End: Complemental strand, 13194330 - 13194289
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 709  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  13194330 attggcaagtgcaccaaatcgtaacaagtaataaagtagtaa 13194289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 673 - 726
Target Start/End: Complemental strand, 15387209 - 15387157
Alignment:
Q  673 caagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttcaca 726  Q
    ||||||||||||||||||||||| |||||||||||||| ||||| |||||||||    
T  15387209 caagtgcaccaaatcgtaacaagcaataaagtagtaagtttatc-ttcttcaca 15387157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 668 - 721
Target Start/End: Complemental strand, 15576242 - 15576189
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttct 721  Q
    |||| |||||||| |||||||||||||||||||||||||| || ||||||||||    
T  15576242 attggcaagtgcatcaaatcgtaacaagtaataaagtagtcagtttatcgttct 15576189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 674 - 726
Target Start/End: Complemental strand, 15320130 - 15320079
Alignment:
Q  674 aagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttcaca 726  Q
    |||||||||||||||||||||| |||||||||||||| ||||| |||||||||    
T  15320130 aagtgcaccaaatcgtaacaagcaataaagtagtaagtttatc-ttcttcaca 15320079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 667 - 710
Target Start/End: Complemental strand, 8037098 - 8037055
Alignment:
Q  667 tattgacaagtgcaccaaatcgtaacaagtaataaagtagtaag 710  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||    
T  8037098 tattggcaagtgcactaaatcgtaacaagtaataaagtagtaag 8037055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 197 - 324
Target Start/End: Complemental strand, 11428893 - 11428766
Alignment:
Q  197 atatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcattcatattcagttaatttggtt 296  Q
    |||||||||| ||||| ||||| |||||||| || |||||| | |   ||| ||||||| |||| ||||||| ||||||||| | |||  ||||||| ||    
T  11428893 atatcacttcccataaatttagcttatgttggttgtgataaaaatatgaattcaattgaatttcttatatttccttcattcaaaatcaaataatttgttt 11428794  T
Q  297 cttccacttttgtgagtttatttctttt 324  Q
    | ||||||||||||  ||| ||||||||    
T  11428793 cctccacttttgtggatttgtttctttt 11428766  T

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Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 668 - 710
Target Start/End: Complemental strand, 6177953 - 6177911
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaag 710  Q
    ||||||||||||| ||||||||||||||||| |||||||||||    
T  6177953 attgacaagtgcatcaaatcgtaacaagtaacaaagtagtaag 6177911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 276
Target Start/End: Complemental strand, 12689899 - 12689819
Alignment:
Q  196 gatatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcatt 276  Q
    ||||||||||| ||||||||||| |||||||  || ||||| |||||| ||||||| |||  ||||||| ||| |||||||    
T  12689899 gatatcacttcccataattttaggttatgtttgttgtgatatgattgagaatccaactgaaattcctatctttccttcatt 12689819  T

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Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 674 - 726
Target Start/End: Complemental strand, 15370771 - 15370720
Alignment:
Q  674 aagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttcaca 726  Q
    |||||||||||||||||| ||| |||||||||||||| ||||| |||||||||    
T  15370771 aagtgcaccaaatcgtaataagcaataaagtagtaagtttatc-ttcttcaca 15370720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 668 - 724
Target Start/End: Original strand, 17858948 - 17859004
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttca 724  Q
    ||||||| ||||| ||||| |||||||||||| |||||||||| |||||||| ||||    
T  17858948 attgacatgtgcatcaaatagtaacaagtaattaagtagtaagtttatcgtttttca 17859004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 362 - 441
Target Start/End: Complemental strand, 12689743 - 12689664
Alignment:
Q  362 tgggttgcatgatttttaagtttacttaatttctaagtttctctgtattagttataaactcttcctataaaaggatagct 441  Q
    |||||||| | ||||||||||||||||||||  ||||||||||   || | ||||||||||| | |||||||||| ||||    
T  12689743 tgggttgcttaatttttaagtttacttaattcttaagtttctccaaatcaattataaactctccttataaaaggagagct 12689664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 667 - 726
Target Start/End: Complemental strand, 15350306 - 15350248
Alignment:
Q  667 tattgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttcaca 726  Q
    |||||| ||||||||||||| |||||||| |||||| ||||||| ||||| |||||||||    
T  15350306 tattgaaaagtgcaccaaattgtaacaagcaataaaatagtaagtttatc-ttcttcaca 15350248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 707
Target Start/End: Complemental strand, 17320833 - 17320794
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagt 707  Q
    |||| ||||||||||||||||||| |||||||||||||||    
T  17320833 attggcaagtgcaccaaatcgtaataagtaataaagtagt 17320794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 668 - 726
Target Start/End: Original strand, 6091931 - 6091989
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttcaca 726  Q
    |||||||||||||  ||||||||| || ||||||||||| ||| |||||||||| ||||    
T  6091931 attgacaagtgcattaaatcgtaaaaaataataaagtagaaagtttatcgttctccaca 6091989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 671 - 718
Target Start/End: Original strand, 7545 - 7592
Alignment:
Q  671 gacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgt 718  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||    
T  7545 gacaagtgcaccaaatcataacaagtaataaagtagtaagtttatcgt 7592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 668 - 708
Target Start/End: Original strand, 10564 - 10604
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagta 708  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  10564 attgacaagtgcaccaaatcataacaagtaataatgtagta 10604  T

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Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 373 - 501
Target Start/End: Complemental strand, 151038 - 150909
Alignment:
Q  373 atttttaagtttacttaatttctaagtttctctgtattagttataaactcttcctataaaaggatagct-agctagttcattcggtacactgaaaagtat 471  Q
    |||||||||||||||||| |  ||||||||||   |||| | || |||||| |||||||||||| |||| | |||||||||||| | ||| || ||||||    
T  151038 atttttaagtttacttaactcttaagtttctccagattaatcatgaactctccctataaaaggagagctcacctagttcattcgatgcaccgagaagtat 150939  T
Q  472 tctaaaactttgaatgtttttcttctctct 501  Q
    ||| ||||||  |||  |||||||||||||    
T  150938 tctgaaacttcaaatacttttcttctctct 150909  T

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Target: scaffold0362 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 668 - 719
Target Start/End: Complemental strand, 10012 - 9961
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgtt 719  Q
    |||| ||| |||||||||||||||||||||||||||||||||  ||||||||    
T  10012 attggcaaatgcaccaaatcgtaacaagtaataaagtagtaaatttatcgtt 9961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 362 - 441
Target Start/End: Complemental strand, 26213 - 26134
Alignment:
Q  362 tgggttgcatgatttttaagtttacttaatttctaagtttctctgtattagttataaactcttcctataaaaggatagct 441  Q
    |||||||| | ||||||||||| ||||||||  ||||||||||   |||||||| ||||||| |||||||||||| ||||    
T  26213 tgggttgcttaatttttaagttaacttaattcttaagtttctccaaattagttacaaactctccctataaaaggagagct 26134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 276
Target Start/End: Complemental strand, 26368 - 26288
Alignment:
Q  196 gatatcacttctcataattttagtttatgttgtttatgataagattgaaaatccaattgagtttcctatattttcttcatt 276  Q
    ||||||||||  ||||||||||| |||||||  || |||||||||||| ||||||| ||| ||| |||| ||| |||||||    
T  26368 gatatcactttccataattttaggttatgtttgttgtgataagattgagaatccaactgaattttctatctttccttcatt 26288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 668 - 726
Target Start/End: Original strand, 36503 - 36561
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttcttcaca 726  Q
    |||| |||||||||||||||  ||||||||||||||||||||| |||| ||||| ||||    
T  36503 attggcaagtgcaccaaatcacaacaagtaataaagtagtaagtttattgttctccaca 36561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0855 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0855
Description:

Target: scaffold0855; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 668 - 721
Target Start/End: Original strand, 2026 - 2079
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttct 721  Q
    |||| |||||||||||||||||||||| || |||||||||||  ||||||||||    
T  2026 attggcaagtgcaccaaatcgtaacaaatattaaagtagtaaatttatcgttct 2079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0847 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0847
Description:

Target: scaffold0847; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 668 - 721
Target Start/End: Original strand, 2191 - 2244
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaagcttatcgttct 721  Q
    |||| |||||||||||||||||||||| || |||||||||||  ||||||||||    
T  2191 attggcaagtgcaccaaatcgtaacaaatattaaagtagtaaatttatcgttct 2244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 668 - 702
Target Start/End: Original strand, 78573 - 78607
Alignment:
Q  668 attgacaagtgcaccaaatcgtaacaagtaataaa 702  Q
    |||||||||||||||||||||||||||||| ||||    
T  78573 attgacaagtgcaccaaatcgtaacaagtagtaaa 78607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 673 - 710
Target Start/End: Complemental strand, 9947 - 9910
Alignment:
Q  673 caagtgcaccaaatcgtaacaagtaataaagtagtaag 710  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  9947 caagtgcatcaaattgtaacaagtaataaagtagtaag 9910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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