View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14335_low_6 (Length: 673)
Name: NF14335_low_6
Description: NF14335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14335_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 10 - 369
Target Start/End: Original strand, 11133087 - 11133447
Alignment:
| Q |
10 |
attatacttacatctctaaaaagactaaaacatacaattagttcaattccctccaagga-aaaaagtattattagttcaattaaagtgaattatttgctt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11133087 |
attatacttacatctctaaaaagactaaaacatacaattagttcaattccctccaaggagaaaaagtattattaattcaattaaagtgaattatttgctt |
11133186 |
T |
|
| Q |
109 |
actaacacttgggtcattgatgtctttgtttggccaagaacatccaaaacgtgacacaccaatcaaacctcaaatgttcgccactatcgattaatctaca |
208 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11133187 |
actaacacgtgggtcattgatgtctttgtttggccaagaacatccaaaacgtgacacaccaatcaaacctcaaatgtttgccactatcgattaatctaca |
11133286 |
T |
|
| Q |
209 |
tgcttatttgtataatggtgcatccttttcacccacttcaaatttcatgaccgtgatggcctcttaaccaattcatgatgacatgctggttggccagggt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11133287 |
tgcttatttgtataatggtgcatccttttcacccacttcaaatttcataaccgtgatggcctcttaaccaattcatgatgacatgctggttggccagggt |
11133386 |
T |
|
| Q |
309 |
tctcatcaccgacgcaccatatttgtcgtatttctctttgtcctctatatactatgctatt |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11133387 |
tctcatcaccgacgcaccatatttgtcgtatttctctttgtcctctatatactatgctatt |
11133447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University