View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14335_low_8 (Length: 617)
Name: NF14335_low_8
Description: NF14335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14335_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 16 - 422
Target Start/End: Complemental strand, 11663546 - 11663142
Alignment:
| Q |
16 |
accgaattatagcaatgtttgtacttctttatcttgcaggttgcataaccattcccacgacctttagcatttccaggaggactagctgcttccactgcca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11663546 |
accgaattatagcaatgtttgtacttctttatcttgcaggttgcataaccattcccacgacctttagcatttccaggaggactagctgcttccactgcca |
11663447 |
T |
|
| Q |
116 |
ctagcacaagcaaaattgacaccaaaatttgaactaatattttagccattgaaataattttctagnnnnnnnnnattcaaacagatattggaaactgttg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11663446 |
ttagcacaagcaaaattgacaccaaaatttgaactaatattttagccattgaaataattttctagtttttttttattcaaacagatattggaaactgttg |
11663347 |
T |
|
| Q |
216 |
aatgaatgagaataacattgcaagagcattgccttttataggcatagaggagagtatatcatgacattaagaagctatacagacggctagaattccaata |
315 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11663346 |
aatgagtgagaataacattgcaagagcattgccttttataggcatagaggagagtatatcatgacatgaagaagctatacagacggctagaattccaata |
11663247 |
T |
|
| Q |
316 |
ctttcggactacgtcttctattgtttccaaagtcagcatattttcacatggttattccttaagatataaatttagttgaggtttcatatataacaaaaaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11663246 |
ctttcggactacgtcttctattgtttccaaagtcagcatattttcacatggttattccttaagatataaatttagttgaggtttca--tataacaaaaaa |
11663149 |
T |
|
| Q |
416 |
ttagttg |
422 |
Q |
| |
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||||||| |
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| T |
11663148 |
ttagttg |
11663142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 21 - 601
Target Start/End: Original strand, 7344926 - 7345502
Alignment:
| Q |
21 |
attatagcaatgtttgtacttctttatcttgcaggttgcataaccattcccacgacctttagcatttccaggaggactagctgcttccactgccactagc |
120 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| | ||||| |||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
7344926 |
attatagcaatgtttgtacttctttatcttgcagcttgcataaccatgctcacgatctttagcaattccaggaggagtagctgcttccactgccactagc |
7345025 |
T |
|
| Q |
121 |
acaagcaaaatt---gacaccaaaatttgaactaatattttagccattgaaataattttctagnnnnnnnnnattcaaacagatattggaaactgttgaa |
217 |
Q |
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||||| | |||| ||||||||| ||||||| | || |||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
7345026 |
acaaggagaattattgacaccaaagtttgaaccattaatttagccattgaaaatattttctagtttttttt-attcaaacagatattggaaactgttgaa |
7345124 |
T |
|
| Q |
218 |
tgaatgagaataacattgcaagagcattgccttttataggcatagaggagagtatatcatgacattaagaagctatacagacggctagaattccaatact |
317 |
Q |
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||| ||||||||||| ||||||||||||||||||||| |||||||| |||| | ||| |||||| |||||||||||||||||||||||||||||| ||| |
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| T |
7345125 |
tgagtgagaataacaatgcaagagcattgccttttattggcatagaagagaatctattgtgacatgaagaagctatacagacggctagaattccaaaact |
7345224 |
T |
|
| Q |
318 |
ttcggactacgtcttctattgtttccaaagtcagcatattttcacatggttattccttaagatataaatttagttgaggtttcatatataacaaaaaatt |
417 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
7345225 |
ttcggactacgtcttctattgtttccaaactcagcatattttcacatggttattccttaagatataaatttagttgatttttc--atataacaaaaaatt |
7345322 |
T |
|
| Q |
418 |
agttggaggcagtggcactttattttggctatacactagt--tatatatacatacatgcacggtattattgtatgtcactttaatgaaaactaggtaaag |
515 |
Q |
| |
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|||| | ||||||||||||||| ||||||||| | |||| || ||||||||||||||| ||| | | || |||||||||||||| |
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| T |
7345323 |
agtt-------gaggcactttattttggatatacactactcatatacatgcatacatgcacggta-tatatctttaaaaaaaaaaaaaaactaggtaaag |
7345414 |
T |
|
| Q |
516 |
gg--atatgaattgttgcagccataataaagggtaaattattttctagtttaaaaatatattgtggcgtctagtttactgtttatttg |
601 |
Q |
| |
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|| ||||||||| ||||||||| |||||||||| ||||||||| ||||||||||||||||||| || || ||||| | ||||||||| |
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| T |
7345415 |
ggatatatgaattattgcagccagaataaagggtgaattattttttagtttaaaaatatattgtagcttcaagtttgccgtttatttg |
7345502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 458 - 601
Target Start/End: Complemental strand, 11662998 - 11662855
Alignment:
| Q |
458 |
tatatatacatacatgcacggtattattgtatgtcactttaatgaaaactaggtaaagggatatgaattgttgcagccataataaagggtaaattatttt |
557 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11662998 |
tatatacacagacatgcacggtattattgtatgtcactttaatgaaaactaggtaaagggatatgaattgttgcagccataataaagggtaaattatttt |
11662899 |
T |
|
| Q |
558 |
ctagtttaaaaatatattgtggcgtctagtttactgtttatttg |
601 |
Q |
| |
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|||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
11662898 |
ctagtttaaaaatatattgtggcgtcaagtttgctgtttatttg |
11662855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 11654162 - 11654013
Alignment:
| Q |
20 |
aattatagcaatgtttgtacttctttatcttgcaggttgcataaccattcccacgacctttagcatttccaggaggactagctgcttccactgccactag |
119 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||| |||| || || |||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
11654162 |
aattatagcaatgtttgtatttctttatcttgcagcttgcatggccatattcatgatctttagcaattccaggaggagtagctgcttccactgccactag |
11654063 |
T |
|
| Q |
120 |
cacaagcaaaattgacaccaaaatttgaactaatattttagccattgaaa |
169 |
Q |
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||||||||| ||||||||||||| |||||| | ||||| ||||||||||| |
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| T |
11654062 |
cacaagcaagattgacaccaaaacttgaaccattatttgagccattgaaa |
11654013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 11667927 - 11667782
Alignment:
| Q |
20 |
aattatagcaatgtttgtacttctttatcttgcaggttgcataaccattcccacgacctttagcatttccaggaggactagctgcttccactgccactag |
119 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||| |||||| |||| | || || |||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
11667927 |
aattatagcaatgtttgtatttctttatcttacagcttgcatggccatactcatgatctttagcaattccaggaggagtagctgcttccactgccactag |
11667828 |
T |
|
| Q |
120 |
cacaagcaaaattgacaccaaaatttgaactaatattttagccatt |
165 |
Q |
| |
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||||||||| ||||||||||||| |||||| | ||||| ||||||| |
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| T |
11667827 |
cacaagcaagattgacaccaaaacttgaaccattatttgagccatt |
11667782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 236 - 296
Target Start/End: Complemental strand, 11667715 - 11667656
Alignment:
| Q |
236 |
caagagcattgccttttataggcatagaggagagtatatcatgacattaagaagctataca |
296 |
Q |
| |
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||||||||||||||||||||||||| || |||| | ||||||||| | ||||||||||||| |
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| T |
11667715 |
caagagcattgccttttataggcat-gaagagaatctatcatgacgtgaagaagctataca |
11667656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 394
Target Start/End: Complemental strand, 11667643 - 11667598
Alignment:
| Q |
349 |
cagcatattttcacatggttattccttaagatataaatttagttga |
394 |
Q |
| |
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||||||||||||||||||||||||||| | ||| ||||||||||| |
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|
| T |
11667643 |
cagcatattttcacatggttattccttcaaatactaatttagttga |
11667598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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