View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14335_low_9 (Length: 596)
Name: NF14335_low_9
Description: NF14335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14335_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Complemental strand, 36393213 - 36392709
Alignment:
| Q |
1 |
ttatcctggaaaccgtggtggtaattattgtcgctatggctgttgcggtgacaggtattatgggagttgcagaaagtgttgctcatatgctggtgaagct |
100 |
Q |
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| T |
36393213 |
ttatcctggaaaccgtggtggtaattattgtcgctatggctgttgcggtgacaggtattatgggagttgcagaaagtgttgctcatatgctggtgaagct |
36393114 |
T |
|
| Q |
101 |
gttgccatgcaaactgagaacaacactcgtaactgatcataatgatatcatcatcatgcatggtgaacttctaagtaataaatttcatgcataaataacg |
200 |
Q |
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| T |
36393113 |
gttgccatgcaaacagagaacaacactcgtaactgatcataatgatatcatcat---gcatggtgaacttctaagtaataaatttcatgcataaataacg |
36393017 |
T |
|
| Q |
201 |
ttgtgtgtttatcaagagtggttatataaaaagacaacaatcagtgttgttgtcaatttccttttgtattgctttgtggatcttgagtagatattccgtt |
300 |
Q |
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| T |
36393016 |
ttgtgtgtttatcaagagtggttatatagaaagacaacaatcagtgttgttgtcaatttccttttgtattgctttgtggatcttgagtagatattccgtt |
36392917 |
T |
|
| Q |
301 |
ttttatatgtttgattttccatcaaaagcaaagaaaattatcttgctaatagtatggatatttcataattaagtggtaatcaagtataaatatgcatacc |
400 |
Q |
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| T |
36392916 |
ttttatatgtttgattttccatcaaaaggaaagaaaattatcttgctaatagtatggatatttcataattaagtggtaatcaagtataaatatgcatcac |
36392817 |
T |
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| Q |
401 |
actatgtattgtgatgatattgatgatatttcttnnnnnnnngcggtgagtgtatcatcatgctaatatttaatatatcaaactatcgataagacggata |
500 |
Q |
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| T |
36392816 |
actatgtattgtgatgatattgatgaactt--aaaaaaaaaagcggtgaatgtatcatcatgctaatatttattatatcaaactatcgttaagacggata |
36392719 |
T |
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| Q |
501 |
ctccatatcg |
510 |
Q |
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| T |
36392718 |
ctccatatcg |
36392709 |
T |
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