View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14336_high_11 (Length: 546)
Name: NF14336_high_11
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 229 - 531
Target Start/End: Original strand, 1700897 - 1701209
Alignment:
| Q |
229 |
ttcatattcatattgtgatttgtgattaataagtcaagatttgtcatacttggaagttggaagttcatttgtacagnnnnnnnn-attacaatttgcgga |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
1700897 |
ttcatattcatattgtgatttgtgattaataagtcaagatttctcatacttggaagttggaagttcattcgtacagtttttttttattacaatttgcgga |
1700996 |
T |
|
| Q |
328 |
---------gatcactatgcgacttttgttcctaatattccgatcccgttcatttctaggggaaattttttccaaacggtgaattcgagtatagattttc |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1700997 |
attttcggagatcactatgcgacttttgttcctaatattccgatcccgttcatttctaggggaaattttttccaaacggtgaattcgagtttagattttc |
1701096 |
T |
|
| Q |
419 |
tagaattattcttttaattgtgtactttgtttagattttgattccgtttttgttgggaaaattgatttctgattgtaagttgaaaataagattccattaa |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1701097 |
tagaattattcttttaattgtgtactttgtttagattttgattccatttttgttgggaaaattgatttctgattgtaagttgaaaataagattccattaa |
1701196 |
T |
|
| Q |
519 |
ttcggtatttatt |
531 |
Q |
| |
|
||||||||||||| |
|
|
| T |
1701197 |
ttcggtatttatt |
1701209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 56 - 142
Target Start/End: Original strand, 1700671 - 1700757
Alignment:
| Q |
56 |
ttatcattgtatggcagccaattcgagcagcggagcgatcactaccttcgggaaaagagtcatcaaccagatctggaagaacaacaa |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1700671 |
ttatcattgtatggcagccaattcgagcagcggatcgatcactaccttcgggaaaagagtcatcaaccagatctggaagaacaacaa |
1700757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 1700789 - 1700844
Alignment:
| Q |
174 |
gcatcaaggtataattttcattcattgtttaattactactgttgctatttcaattt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1700789 |
gcatcaaggtataattttcattcattgtttaattactactgttgctatttcaattt |
1700844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University