View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14336_high_12 (Length: 513)
Name: NF14336_high_12
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 363
Target Start/End: Original strand, 12818459 - 12818810
Alignment:
| Q |
18 |
cggtggacattacggaaaaaatctcagcgttggttaaccccgcatcctcaggctcagaaactcccacaacatcaa------cgtcaatgtcatcctcaag |
111 |
Q |
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| T |
12818459 |
cggtggacattacggaaaaaatatcagcgttggttaaccccgcatcctcaggctcagaaactcccacaacatcaacgtcaacgtcaatgtcatcctcaag |
12818558 |
T |
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| Q |
112 |
atcagccaaagaaatacccatttgagcaggatctagggtttcagaaattgaactcatcattgaagatgaattcatttgattctctttttgttcttgttct |
211 |
Q |
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| T |
12818559 |
atcagccaaagaaatacccatttgagcaggatctagggtttcagaaattgaactcatcattgaagatgaattcatttgattctcttcttgttcttgttct |
12818658 |
T |
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| Q |
212 |
tgttcaccacgtggtgaatttgaatcagacattgaaattttgaaagttagggtttcggagaagaaataattgagagaaagagaagtttaggatttccaag |
311 |
Q |
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| T |
12818659 |
tgttcaccacgtggtgaatttgaatcagacattgaaattttgaaagttagggtttcgaagaagaaataattgagagaaagagaagtttaggatttccaag |
12818758 |
T |
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| Q |
312 |
aagtgaagtgaaattcttggttggttttaataaattagggttttgaagtgat |
363 |
Q |
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| T |
12818759 |
aagtgaagtgaaattcttggttggttataataaattagggttttgaagtgat |
12818810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 503
Target Start/End: Original strand, 12818921 - 12818950
Alignment:
| Q |
474 |
gacatcgcgctctttctctttctctctctg |
503 |
Q |
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| T |
12818921 |
gacatcgcgctctttctctttctctctctg |
12818950 |
T |
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