View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14336_high_15 (Length: 461)
Name: NF14336_high_15
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 16 - 443
Target Start/End: Complemental strand, 3996593 - 3996166
Alignment:
| Q |
16 |
atgcaacaggtttctgtctcttcctcctccattgaagataacaaaacaaaaaacaatggtgataatgggaagcacccattgtatcgtggagtaagaatgc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3996593 |
atgcaacaggtttctgtctcttcctcctccattgaagataacaaaacaaaaaacaatggtgataatgggaagcacccattgtatcgtggagtaagaatgc |
3996494 |
T |
|
| Q |
116 |
gtagttggggaaaatgggtttcagaaattagagagcccaagaaaaaatcaagaatttggctaggcacttatccaacacccgagatggcagctcgagccca |
215 |
Q |
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| T |
3996493 |
gtagttggggaaaatgggtttcagaaattagagagcccaagaaaaaatcaagaatttggctaggcacttatccaacacccgagatggcagctcgagccca |
3996394 |
T |
|
| Q |
216 |
tgacgttgcggcccaagccattaaaggcagctcggcttacctcaatttccccgaattagctcaacaacttccacgcccgaccactaattctcccaaggac |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3996393 |
tgacgttgcggcccaagccattaaaggcagctcggcttacctcaatttccccgaattagctcaacaacttccacgcccgaccactaattctcctaaggac |
3996294 |
T |
|
| Q |
316 |
attcaagccgctgctgctaaggcagcgactatgggctctctccacgaagcccaggaccaagaccacgacatacaagaaacgttaaatgacgaggatgata |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3996293 |
attcaagccgctgctgctaaggcagcgactatgggctctctccacgaagcccaggaccaagaccacgacatacaagaaacgttaaatgatgaggatgata |
3996194 |
T |
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| Q |
416 |
cattctacgacctccctgatctcttact |
443 |
Q |
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| T |
3996193 |
cattctacgacctccctgatctcttact |
3996166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 103 - 276
Target Start/End: Original strand, 41521676 - 41521849
Alignment:
| Q |
103 |
ggagtaagaatgcgtagttggggaaaatgggtttcagaaattagagagcccaagaaaaaatcaagaatttggctaggcacttatccaacacccgagatgg |
202 |
Q |
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||||||||||||||| ||||| |||||||| ||||| ||||||||||| | |||||||||||||||||||| || |||| |||||| || || |||| |
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| T |
41521676 |
ggagtaagaatgcgtcaatggggcaaatgggtatcagagattagagagccaagaaaaaaatcaagaatttggctcggaacttttccaactcctgatatgg |
41521775 |
T |
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| Q |
203 |
cagctcgagcccatgacgttgcggcccaagccattaaaggcagctcggcttacctcaatttccccgaattagct |
276 |
Q |
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| T |
41521776 |
ctgctagagctcatgatgtggctgctcttactatcaaaggctcttcggcttacctcaattttcccgaattagct |
41521849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 212
Target Start/End: Original strand, 51237892 - 51238007
Alignment:
| Q |
97 |
tatcgtggagtaagaatgcgtagttggggaaaatgggtttcagaaattagagagcccaagaaaaaatcaagaatttggctaggcacttatccaacacccg |
196 |
Q |
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|||||||| || ||||||| | ||||||||||||||| || |||||| | ||||| ||||||||||| |||| ||||| ||||| | ||| ||||| | |
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| T |
51237892 |
tatcgtggtgtccgaatgcgaaattggggaaaatgggtgtccgaaattcgtgagcctaagaaaaaatcccgaatatggctcggcacatttcccacaccgg |
51237991 |
T |
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| Q |
197 |
agatggcagctcgagc |
212 |
Q |
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| T |
51237992 |
aaatggcagctcgagc |
51238007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 23507004 - 23506946
Alignment:
| Q |
169 |
atttggctaggcacttatccaacacccgagatggcagctcgagcccatgacgttgcggc |
227 |
Q |
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||||||||||| |||| ||||||| |||||||||||||||| |||||||| |||||||| |
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| T |
23507004 |
atttggctaggaacttttccaacagccgagatggcagctcgggcccatgatgttgcggc |
23506946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 23266566 - 23266508
Alignment:
| Q |
166 |
agaatttggctaggcacttatccaacacccgagatggcagctcgagcccatgacgttgc |
224 |
Q |
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|||||||||||||| |||| ||||||| ||||||||||||| |||||||| || ||||| |
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| T |
23266566 |
agaatttggctaggaacttttccaacagccgagatggcagcccgagcccacgatgttgc |
23266508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 23252032 - 23251977
Alignment:
| Q |
169 |
atttggctaggcacttatccaacacccgagatggcagctcgagcccatgacgttgc |
224 |
Q |
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| T |
23252032 |
atttggctaggaacttttccaacagccgagatggcagcccgagcccacgatgttgc |
23251977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 23391464 - 23391408
Alignment:
| Q |
168 |
aatttggctaggcacttatccaacacccgagatggcagctcgagcccatgacgttgc |
224 |
Q |
| |
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||||||||||||||||| |||||| | ||||||||||| ||||| ||||| ||||| |
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| T |
23391464 |
aatttggctaggcacttttccaactgcggagatggcagcccgagcacatgatgttgc |
23391408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 9776648 - 9776590
Alignment:
| Q |
121 |
tggggaaaatgggtttcagaaattagagagcccaagaaaaaa-tcaagaatttggctagg |
179 |
Q |
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|||||||||||||| ||||| ||||||||| ||||||||||| |||||||| |||||||| |
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| T |
9776648 |
tggggaaaatgggtgtcagagattagagag-ccaagaaaaaagtcaagaatatggctagg |
9776590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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