View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14336_high_18 (Length: 445)
Name: NF14336_high_18
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_high_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 186 - 428
Target Start/End: Complemental strand, 12744503 - 12744260
Alignment:
| Q |
186 |
ttacttacaaatttgctaacttggtacttagatgagaaagacctccattagccacaactaaatatatgc--cctcaaaatcaatgggattcactttgtga |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
12744503 |
ttacttacaaatttgctaacttggtacttagatgagaaagacctccattagccacaactaaatatatgcgccctcaaaatcaatggcattcactttgtga |
12744404 |
T |
|
| Q |
284 |
ggcatagttgactttccctacctcggtggtctgcaagttctctacttaatctgccgacaaatatcaagtaaaaatcaccaagttcaatttaagattattt |
383 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12744403 |
ggcatagttgactt-ccctacctcggtggtctgcaagttctctacttaatctgccgacaaatatcaagtaaaaatcaccaagttcaatttaagattattt |
12744305 |
T |
|
| Q |
384 |
aatagatcatttaatccatgataggaagcatcacacaatctattg |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
12744304 |
aatagatcatttaatccatgataggaagcatcccagaatctattg |
12744260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 186 - 428
Target Start/End: Complemental strand, 12807587 - 12807344
Alignment:
| Q |
186 |
ttacttacaaatttgctaacttggtacttagatgagaaagacctccattagccacaactaaatatatgc--cctcaaaatcaatgggattcactttgtga |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
12807587 |
ttacttacaaatttgctaacttggtacttagatgagaaagacctccattagccacaactaaatatatgcgccctcaaaatcaatggcattcactttgtga |
12807488 |
T |
|
| Q |
284 |
ggcatagttgactttccctacctcggtggtctgcaagttctctacttaatctgccgacaaatatcaagtaaaaatcaccaagttcaatttaagattattt |
383 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12807487 |
ggcatagttgactt-ccctacctcggtggtctgcaagttctctacttaatctgccgacaaatatcaagtaaaaatcaccaagttcaatttaagattattt |
12807389 |
T |
|
| Q |
384 |
aatagatcatttaatccatgataggaagcatcacacaatctattg |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
12807388 |
aatagatcatttaatccatgataggaagcatcccagaatctattg |
12807344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 12744688 - 12744548
Alignment:
| Q |
9 |
attatactaaaaggtcgatacaccggaatagcacagtcaactc--------acatacacacagatcagtaaagaaaactgtactagtctagacattttcc |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12744688 |
attatgctaaaaggtcgatacaccggaatagcacagtcaactctttcagacacatacacacagatcagtaaagaaaactgtactagtctagacattttcc |
12744589 |
T |
|
| Q |
101 |
aaatgatatgatagtaagctcctcttggcgtcttagtttag |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12744588 |
aaatgatatgatagtaagctcctcttggcgtcttagtttag |
12744548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 12807772 - 12807632
Alignment:
| Q |
9 |
attatactaaaaggtcgatacaccggaatagcacagtcaactc--------acatacacacagatcagtaaagaaaactgtactagtctagacattttcc |
100 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12807772 |
attatgctaaaaggtcgatacagcggaatagcacagtcaactctttcagacacatacacacagatcagtaaagaaaactgtactagtctagacattttcc |
12807673 |
T |
|
| Q |
101 |
aaatgatatgatagtaagctcctcttggcgtcttagtttag |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12807672 |
aaatgatatgatagtaagctcctcttggcgtcttagtttag |
12807632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 35035867 - 35035905
Alignment:
| Q |
256 |
ctcaaaatcaatgggattcactttgtgaggcatagttga |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35035867 |
ctcaaaatcaatgggattcactttgtgaggcatagttga |
35035905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 36852871 - 36852833
Alignment:
| Q |
256 |
ctcaaaatcaatgggattcactttgtgaggcatagttga |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36852871 |
ctcaaaatcaatgggattcactttgtgaggcatagttga |
36852833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University