View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14336_high_19 (Length: 426)
Name: NF14336_high_19
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 25 - 408
Target Start/End: Complemental strand, 22187396 - 22187013
Alignment:
| Q |
25 |
cttgctcttgattcaggctctccatatcctgatcctccacgctatcataggcttattggtcgcttaatttacctcaccataactcggccagagaaataaa |
124 |
Q |
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| T |
22187396 |
cttgctcttgattcaagccctccatatcctgatcctccacgctatcgtaggcttattggtcgcttaatttacctcaccataactcggccagagaaataaa |
22187297 |
T |
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| Q |
125 |
gagacacacgatcaattaattaatccaatcaaaggaatagggaaagagacacaacgcactcttttgtttctcccaaagcctggctcataatcgaaaagtt |
224 |
Q |
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| T |
22187296 |
gagacacacactcaattaattaatccaatcaaaggaatagggaaatagacacaacacactcttttgtttctcccaaagcctggctcatatccgaaaagtt |
22187197 |
T |
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| Q |
225 |
caatcagattagcaatttctcgaaggtagtcctatagtgcaagatatataaaaaagaaatcagatcataaaattcattgaaatatatctgataatacaaa |
324 |
Q |
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| T |
22187196 |
caatcagattaggaatttctcgaaggtagtcctatagtgcaaaatatataaaaaagaaattagatcataaaattcattgaaatatatctgataatacaaa |
22187097 |
T |
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| Q |
325 |
ttattcaatttttcttggagtggtttttaacacaataccatgtactgataaaaagaacaagatatatttgaaaaaccatgtaag |
408 |
Q |
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| T |
22187096 |
ttattcaatttttcttggagtggtttttaacacaataccatgtactgataaaaagaacaagatatatttgaaaaaccatgtaag |
22187013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 13691059 - 13691144
Alignment:
| Q |
29 |
ctcttgattcaggctctccatatcctgatcctccacgctatcataggcttattggtcgcttaatttacctcaccataactcggcca |
114 |
Q |
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| T |
13691059 |
ctcttgattcaggccctccatatcctgatcctccaccctatcatagacttattggtcgcttaatttacctcaccataactcggcca |
13691144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 26645797 - 26645738
Alignment:
| Q |
59 |
ctccacgctatcataggcttattggtcgcttaatttacctcaccataactcggccagaga |
118 |
Q |
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| T |
26645797 |
ctccacactatcgtaggcttattggtcgcttaatttacctcaccataactcggccagaga |
26645738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 9587819 - 9587912
Alignment:
| Q |
25 |
cttgctcttgattcaggctctccatatcctgatcctccacgctatcataggcttattggtcgcttaatttacctcaccataactcggccagaga |
118 |
Q |
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| T |
9587819 |
cttgctcttgattcaggtcctgcatatcctgatcctccgcgctaccgtaggcttattggtcgcttaatttacctcactataactcggccagaga |
9587912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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